Python Module Index

p | s | x


	p
	`pwem`
	`pwem.bibtex`
	`pwem.constants`
	`pwem.convert`
	`pwem.convert.atom_struct`
	`pwem.convert.headers`
	`pwem.convert.pdb_list`
	`pwem.convert.sequence`
	`pwem.convert.symmetry`
	`pwem.convert.transformations`
	`pwem.convert.trigonometry`
	`pwem.convert.utils`
	`pwem.emlib`
	`pwem.emlib.image`
	`pwem.emlib.image.image_handler`
	`pwem.emlib.image.image_readers`
	`pwem.emlib.lib`
	`pwem.emlib.metadata`
	`pwem.emlib.metadata.utils`
	`pwem.objects`
	`pwem.objects.data`
	`pwem.objects.data_flexhub`
	`pwem.objects.data_tiltpairs`
	`pwem.protocols`
	`pwem.protocols.parallel`
	`pwem.protocols.protocol`
	`pwem.protocols.protocol_2d`
	`pwem.protocols.protocol_3d`
	`pwem.protocols.protocol_align_movies`
	`pwem.protocols.protocol_alignment_assign`
	`pwem.protocols.protocol_alignment_invertHand`
	`pwem.protocols.protocol_base_flexhub`
	`pwem.protocols.protocol_batch`
	`pwem.protocols.protocol_boxsize_checkpoint`
	`pwem.protocols.protocol_boxsize_parameters`
	`pwem.protocols.protocol_classes_selector`
	`pwem.protocols.protocol_create_stream_data`
	`pwem.protocols.protocol_ctf_assign`
	`pwem.protocols.protocol_export`
	`pwem.protocols.protocol_export.protocol_export_DB`
	`pwem.protocols.protocol_extract_coordinates`
	`pwem.protocols.protocol_import`
	`pwem.protocols.protocol_import.base`
	`pwem.protocols.protocol_import.coordinates`
	`pwem.protocols.protocol_import.ctfs`
	`pwem.protocols.protocol_import.dataimport`
	`pwem.protocols.protocol_import.images`
	`pwem.protocols.protocol_import.masks`
	`pwem.protocols.protocol_import.micrographs`
	`pwem.protocols.protocol_import.particles`
	`pwem.protocols.protocol_import.sequence`
	`pwem.protocols.protocol_import.volumes`
	`pwem.protocols.protocol_mathematical_operator`
	`pwem.protocols.protocol_micrographs`
	`pwem.protocols.protocol_movie_eraser`
	`pwem.protocols.protocol_movies`
	`pwem.protocols.protocol_origin_sampling_volume`
	`pwem.protocols.protocol_particles`
	`pwem.protocols.protocol_particles_picking`
	`pwem.protocols.protocol_pdf_report`
	`pwem.protocols.protocol_projection_edit`
	`pwem.protocols.protocol_set_editor`
	`pwem.protocols.protocol_set_filter`
	`pwem.protocols.protocol_sets`
	`pwem.protocols.protocol_tests`
	`pwem.protocols.protocol_tiltpairs`
	`pwem.protocols.protocol_tools`
	`pwem.protocols.protocol_wait`
	`pwem.utils`
	`pwem.viewers`
	`pwem.viewers.filehandlers`
	`pwem.viewers.plotter`
	`pwem.viewers.showj`
	`pwem.viewers.viewer_angular_dist`
	`pwem.viewers.viewer_base`
	`pwem.viewers.viewer_chimera`
	`pwem.viewers.viewer_coordinates`
	`pwem.viewers.viewer_fsc`
	`pwem.viewers.viewer_localres`
	`pwem.viewers.viewer_pdf`
	`pwem.viewers.viewer_sequence`
	`pwem.viewers.viewer_vmd`
	`pwem.viewers.viewer_volumes`
	`pwem.viewers.viewers_data`
	`pwem.viewers.views`
	`pwem.wizards`
	`pwem.wizards.wizard`
	`pwem.wizards.wizards`
	`pwem.wizards.wizards_3d`
	`pwem.wizards.wizards_3d.callbacks`
	`pwem.wizards.wizards_3d.mask_structure_wizard`
	`pwem.wizards.wizards_3d.mask_volume_wizard`
	`pyworkflow`
	`pyworkflow.apps`
	`pyworkflow.apps.pw_manager`
	`pyworkflow.apps.pw_plot`
	`pyworkflow.apps.pw_project`
	`pyworkflow.apps.pw_protocol_list`
	`pyworkflow.apps.pw_protocol_run`
	`pyworkflow.apps.pw_run_tests`
	`pyworkflow.apps.pw_schedule_run`
	`pyworkflow.apps.pw_sleep`
	`pyworkflow.apps.pw_sync_data`
	`pyworkflow.apps.pw_viewer`
	`pyworkflow.config`
	`pyworkflow.constants`
	`pyworkflow.exceptions`
	`pyworkflow.gui`
	`pyworkflow.gui.browser`
	`pyworkflow.gui.canvas`
	`pyworkflow.gui.dialog`
	`pyworkflow.gui.form`
	`pyworkflow.gui.graph`
	`pyworkflow.gui.graph_layout`
	`pyworkflow.gui.gui`
	`pyworkflow.gui.matplotlib_image`
	`pyworkflow.gui.plotter`
	`pyworkflow.gui.project`
	`pyworkflow.gui.project.base`
	`pyworkflow.gui.project.constants`
	`pyworkflow.gui.project.labels`
	`pyworkflow.gui.project.project`
	`pyworkflow.gui.project.searchprotocol`
	`pyworkflow.gui.project.searchrun`
	`pyworkflow.gui.project.steps`
	`pyworkflow.gui.project.utils`
	`pyworkflow.gui.project.variables`
	`pyworkflow.gui.project.viewdata`
	`pyworkflow.gui.project.viewprojects`
	`pyworkflow.gui.project.viewprotocols`
	`pyworkflow.gui.project.viewprotocols_extra`
	`pyworkflow.gui.text`
	`pyworkflow.gui.tooltip`
	`pyworkflow.gui.tree`
	`pyworkflow.gui.widgets`
	`pyworkflow.mapper`
	`pyworkflow.mapper.mapper`
	`pyworkflow.mapper.sqlite`
	`pyworkflow.mapper.sqlite_db`
	`pyworkflow.object`
	`pyworkflow.plugin`
	`pyworkflow.project`
	`pyworkflow.project.config`
	`pyworkflow.project.manager`
	`pyworkflow.project.project`
	`pyworkflow.protocol`
	`pyworkflow.protocol.bibtex`
	`pyworkflow.protocol.constants`
	`pyworkflow.protocol.executor`
	`pyworkflow.protocol.hosts`
	`pyworkflow.protocol.launch`
	`pyworkflow.protocol.package`
	`pyworkflow.protocol.params`
	`pyworkflow.protocol.protocol`
	`pyworkflow.template`
	`pyworkflow.tests`
	`pyworkflow.tests.test_utils`
	`pyworkflow.tests.tests`
	`pyworkflow.utils`
	`pyworkflow.utils.dataset`
	`pyworkflow.utils.echo`
	`pyworkflow.utils.graph`
	`pyworkflow.utils.log`
	`pyworkflow.utils.path`
	`pyworkflow.utils.process`
	`pyworkflow.utils.profiler`
	`pyworkflow.utils.progressbar`
	`pyworkflow.utils.properties`
	`pyworkflow.utils.reflection`
	`pyworkflow.utils.utils`
	`pyworkflow.utils.which`
	`pyworkflow.viewer`
	`pyworkflow.webservices`
	`pyworkflow.webservices.config`
	`pyworkflow.webservices.notifier`
	`pyworkflow.webservices.repository`
	`pyworkflow.webservices.workflowhub`
	`pyworkflow.wizard`

	s
	`scipion`
	`scipion.constants`
	`scipion.guiplugin`
	`scipion.install`
	`scipion.install.change_rpath`
	`scipion.install.clean`
	`scipion.install.find_deps`
	`scipion.install.funcs`
	`scipion.install.inspect_plugins`
	`scipion.install.install_plugin`
	`scipion.install.plugin_funcs`
	`scipion.install.plugin_manager`
	`scipion.install.update_manager`
	`scipion.scripts`
	`scipion.scripts.config`
	`scipion.scripts.fontbrowser`
	`scipion.scripts.kickoff`
	`scipion.scripts.tutorial`
	`scipion.utils`

	x
	`xmipp3`
	`xmipp3.base`
	`xmipp3.bibtex`
	`xmipp3.constants`
	`xmipp3.convert`
	`xmipp3.convert.convert`
	`xmipp3.convert.dataimport`
	`xmipp3.convert.io_coordinates`
	`xmipp3.programs`
	`xmipp3.protocols`
	`xmipp3.protocols.protocol_align_volume`
	`xmipp3.protocols.protocol_align_volume_and_particles`
	`xmipp3.protocols.protocol_analyze_local_ctf`
	`xmipp3.protocols.protocol_angular_graph_consistency`
	`xmipp3.protocols.protocol_apply_alignment`
	`xmipp3.protocols.protocol_apply_tilt_to_ctf`
	`xmipp3.protocols.protocol_apply_transformation_matrix`
	`xmipp3.protocols.protocol_apply_zernike3d`
	`xmipp3.protocols.protocol_assignment_tilt_pair`
	`xmipp3.protocols.protocol_break_symmetry`
	`xmipp3.protocols.protocol_center_particles`
	`xmipp3.protocols.protocol_cl2d`
	`xmipp3.protocols.protocol_cl2d_align`
	`xmipp3.protocols.protocol_cl2d_clustering`
	`xmipp3.protocols.protocol_classes_2d_mapping`
	`xmipp3.protocols.protocol_classify_pca`
	`xmipp3.protocols.protocol_classify_pca_streaming`
	`xmipp3.protocols.protocol_compare_angles`
	`xmipp3.protocols.protocol_compare_reprojections`
	`xmipp3.protocols.protocol_consensus_classes`
	`xmipp3.protocols.protocol_consensus_local_ctf`
	`xmipp3.protocols.protocol_convert_pdb`
	`xmipp3.protocols.protocol_core_analysis`
	`xmipp3.protocols.protocol_create_gallery`
	`xmipp3.protocols.protocol_ctf_consensus`
	`xmipp3.protocols.protocol_ctf_correct_wiener2d`
	`xmipp3.protocols.protocol_ctf_defocus_group`
	`xmipp3.protocols.protocol_ctf_micrographs`
	`xmipp3.protocols.protocol_deep_center`
	`xmipp3.protocols.protocol_deep_center_predict`
	`xmipp3.protocols.protocol_deep_hand`
	`xmipp3.protocols.protocol_deep_micrograph_screen`
	`xmipp3.protocols.protocol_denoise_particles`
	`xmipp3.protocols.protocol_eliminate_empty_images`
	`xmipp3.protocols.protocol_enrich`
	`xmipp3.protocols.protocol_extract_asymmetric_unit`
	`xmipp3.protocols.protocol_extract_particles`
	`xmipp3.protocols.protocol_extract_particles_movies`
	`xmipp3.protocols.protocol_extract_particles_pairs`
	`xmipp3.protocols.protocol_flexalign`
	`xmipp3.protocols.protocol_generate_reprojections`
	`xmipp3.protocols.protocol_helical_parameters`
	`xmipp3.protocols.protocol_kerdensom`
	`xmipp3.protocols.protocol_local_ctf`
	`xmipp3.protocols.protocol_mics_defocus_balancer`
	`xmipp3.protocols.protocol_ml2d`
	`xmipp3.protocols.protocol_movie_alignment_consensus`
	`xmipp3.protocols.protocol_movie_dose_analysis`
	`xmipp3.protocols.protocol_movie_gain`
	`xmipp3.protocols.protocol_movie_max_shift`
	`xmipp3.protocols.protocol_movie_split_frames`
	`xmipp3.protocols.protocol_multiple_fscs`
	`xmipp3.protocols.protocol_multireference_alignability`
	`xmipp3.protocols.protocol_normalize_strain`
	`xmipp3.protocols.protocol_particle_pick`
	`xmipp3.protocols.protocol_particle_pick_automatic`
	`xmipp3.protocols.protocol_particle_pick_consensus`
	`xmipp3.protocols.protocol_particle_pick_pairs`
	`xmipp3.protocols.protocol_particle_pick_remove_duplicates`
	`xmipp3.protocols.protocol_phantom_create`
	`xmipp3.protocols.protocol_pick_noise`
	`xmipp3.protocols.protocol_postProcessing_deepPostProcessing`
	`xmipp3.protocols.protocol_preprocess`
	`xmipp3.protocols.protocol_preprocess.geometrical_mask`
	`xmipp3.protocols.protocol_preprocess.protocol_add_noise`
	`xmipp3.protocols.protocol_preprocess.protocol_create_mask2d`
	`xmipp3.protocols.protocol_preprocess.protocol_create_mask3d`
	`xmipp3.protocols.protocol_preprocess.protocol_crop_resize`
	`xmipp3.protocols.protocol_preprocess.protocol_filter`
	`xmipp3.protocols.protocol_preprocess.protocol_image_operate`
	`xmipp3.protocols.protocol_preprocess.protocol_mask`
	`xmipp3.protocols.protocol_preprocess.protocol_movie_resize`
	`xmipp3.protocols.protocol_preprocess.protocol_preprocess`
	`xmipp3.protocols.protocol_preprocess.protocol_process`
	`xmipp3.protocols.protocol_preprocess_micrographs`
	`xmipp3.protocols.protocol_projmatch`
	`xmipp3.protocols.protocol_projmatch.projmatch_form`
	`xmipp3.protocols.protocol_projmatch.projmatch_initialize`
	`xmipp3.protocols.protocol_projmatch.projmatch_steps`
	`xmipp3.protocols.protocol_projmatch.protocol_projmatch`
	`xmipp3.protocols.protocol_random_conical_tilt`
	`xmipp3.protocols.protocol_ransac`
	`xmipp3.protocols.protocol_reconstruct_fourier`
	`xmipp3.protocols.protocol_reconstruct_highres`
	`xmipp3.protocols.protocol_reconstruct_significant`
	`xmipp3.protocols.protocol_reconstruct_swarm`
	`xmipp3.protocols.protocol_resolution3d`
	`xmipp3.protocols.protocol_resolution_bfactor`
	`xmipp3.protocols.protocol_resolution_deepres`
	`xmipp3.protocols.protocol_resolution_directional`
	`xmipp3.protocols.protocol_resolution_fso`
	`xmipp3.protocols.protocol_resolution_monogenic_signal`
	`xmipp3.protocols.protocol_rotate_volume`
	`xmipp3.protocols.protocol_rotational_symmetry`
	`xmipp3.protocols.protocol_screen_deepConsensus`
	`xmipp3.protocols.protocol_screen_deeplearning`
	`xmipp3.protocols.protocol_screen_particles`
	`xmipp3.protocols.protocol_shift_particles`
	`xmipp3.protocols.protocol_shift_volume`
	`xmipp3.protocols.protocol_simulate_ctf`
	`xmipp3.protocols.protocol_structure_map`
	`xmipp3.protocols.protocol_structure_map_zernike3d`
	`xmipp3.protocols.protocol_subtract_projection`
	`xmipp3.protocols.protocol_tilt_analysis`
	`xmipp3.protocols.protocol_trigger_data`
	`xmipp3.protocols.protocol_validate_fscq`
	`xmipp3.protocols.protocol_validate_nontilt`
	`xmipp3.protocols.protocol_validate_overfitting`
	`xmipp3.protocols.protocol_volume_adjust_sub`
	`xmipp3.protocols.protocol_volume_consensus`
	`xmipp3.protocols.protocol_volume_deform_zernike3d`
	`xmipp3.protocols.protocol_volume_local_adjust`
	`xmipp3.protocols.protocol_volume_local_sharpening`
	`xmipp3.protocols.protocol_volume_strain`
	`xmipp3.protocols.protocol_write_testC`
	`xmipp3.protocols.protocol_write_testP`
	`xmipp3.utils`
	`xmipp3.version`
	`xmipp3.viewers.plotter`
	`xmipp3.viewers.viewer`