| | |
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p | |
 |
pwem |
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pwem.bibtex |
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pwem.constants |
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pwem.convert |
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pwem.convert.atom_struct |
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pwem.convert.headers |
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pwem.convert.pdb_list |
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pwem.convert.sequence |
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pwem.convert.symmetry |
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pwem.convert.transformations |
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pwem.convert.trigonometry |
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pwem.convert.utils |
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pwem.emlib |
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pwem.emlib.image |
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pwem.emlib.image.image_handler |
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pwem.emlib.image.image_readers |
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pwem.emlib.lib |
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pwem.emlib.metadata |
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pwem.emlib.metadata.utils |
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pwem.objects |
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pwem.objects.data |
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pwem.objects.data_flexhub |
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pwem.objects.data_tiltpairs |
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pwem.protocols |
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pwem.protocols.parallel |
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pwem.protocols.protocol |
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pwem.protocols.protocol_2d |
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pwem.protocols.protocol_3d |
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pwem.protocols.protocol_align_movies |
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pwem.protocols.protocol_alignment_assign |
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pwem.protocols.protocol_alignment_invertHand |
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pwem.protocols.protocol_base_flexhub |
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pwem.protocols.protocol_batch |
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pwem.protocols.protocol_boxsize_checkpoint |
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pwem.protocols.protocol_boxsize_parameters |
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pwem.protocols.protocol_classes_selector |
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pwem.protocols.protocol_create_stream_data |
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pwem.protocols.protocol_ctf_assign |
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pwem.protocols.protocol_export |
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pwem.protocols.protocol_export.protocol_export_DB |
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pwem.protocols.protocol_extract_coordinates |
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pwem.protocols.protocol_import |
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pwem.protocols.protocol_import.base |
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pwem.protocols.protocol_import.coordinates |
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pwem.protocols.protocol_import.ctfs |
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pwem.protocols.protocol_import.dataimport |
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pwem.protocols.protocol_import.images |
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pwem.protocols.protocol_import.masks |
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pwem.protocols.protocol_import.micrographs |
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pwem.protocols.protocol_import.particles |
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pwem.protocols.protocol_import.sequence |
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pwem.protocols.protocol_import.volumes |
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pwem.protocols.protocol_mathematical_operator |
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pwem.protocols.protocol_micrographs |
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pwem.protocols.protocol_movie_eraser |
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pwem.protocols.protocol_movies |
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pwem.protocols.protocol_origin_sampling_volume |
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pwem.protocols.protocol_particles |
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pwem.protocols.protocol_particles_picking |
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pwem.protocols.protocol_pdf_report |
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pwem.protocols.protocol_projection_edit |
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pwem.protocols.protocol_set_editor |
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pwem.protocols.protocol_set_filter |
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pwem.protocols.protocol_sets |
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pwem.protocols.protocol_tests |
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pwem.protocols.protocol_tiltpairs |
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pwem.protocols.protocol_tools |
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pwem.protocols.protocol_wait |
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pwem.utils |
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pwem.viewers |
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pwem.viewers.filehandlers |
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pwem.viewers.mdviewer |
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pwem.viewers.mdviewer.readers |
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pwem.viewers.mdviewer.sqlite_dao |
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pwem.viewers.mdviewer.star_dao |
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pwem.viewers.mdviewer.viewer |
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pwem.viewers.mdviewer.volumeViewer |
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pwem.viewers.plotter |
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pwem.viewers.showj |
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pwem.viewers.viewer_angular_dist |
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pwem.viewers.viewer_base |
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pwem.viewers.viewer_chimera |
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pwem.viewers.viewer_coordinates |
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pwem.viewers.viewer_fsc |
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pwem.viewers.viewer_localres |
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pwem.viewers.viewer_pdf |
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pwem.viewers.viewer_sequence |
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pwem.viewers.viewer_vmd |
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pwem.viewers.viewer_volumes |
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pwem.viewers.viewers_data |
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pwem.viewers.views |
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pwem.wizards |
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pwem.wizards.wizard |
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pwem.wizards.wizards |
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pwem.wizards.wizards_3d |
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pwem.wizards.wizards_3d.callbacks |
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pwem.wizards.wizards_3d.mask_structure_wizard |
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pwem.wizards.wizards_3d.mask_volume_wizard |
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pyworkflow |
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pyworkflow.apps |
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pyworkflow.apps.pw_manager |
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pyworkflow.apps.pw_plot |
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pyworkflow.apps.pw_project |
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pyworkflow.apps.pw_protocol_list |
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pyworkflow.apps.pw_protocol_run |
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pyworkflow.apps.pw_run_tests |
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pyworkflow.apps.pw_schedule_run |
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pyworkflow.apps.pw_sleep |
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pyworkflow.apps.pw_sync_data |
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pyworkflow.apps.pw_viewer |
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pyworkflow.config |
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pyworkflow.constants |
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pyworkflow.exceptions |
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pyworkflow.gui |
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pyworkflow.gui.browser |
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pyworkflow.gui.canvas |
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pyworkflow.gui.dialog |
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pyworkflow.gui.form |
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pyworkflow.gui.graph |
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pyworkflow.gui.graph_layout |
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pyworkflow.gui.gui |
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pyworkflow.gui.matplotlib_image |
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pyworkflow.gui.plotter |
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pyworkflow.gui.project |
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pyworkflow.gui.project.base |
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pyworkflow.gui.project.constants |
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pyworkflow.gui.project.labels |
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pyworkflow.gui.project.project |
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pyworkflow.gui.project.searchprotocol |
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pyworkflow.gui.project.searchrun |
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pyworkflow.gui.project.steps |
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pyworkflow.gui.project.utils |
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pyworkflow.gui.project.variables |
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pyworkflow.gui.project.viewdata |
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pyworkflow.gui.project.viewprojects |
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pyworkflow.gui.project.viewprotocols |
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pyworkflow.gui.project.viewprotocols_extra |
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pyworkflow.gui.text |
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pyworkflow.gui.tooltip |
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pyworkflow.gui.tree |
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pyworkflow.gui.widgets |
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pyworkflow.mapper |
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pyworkflow.mapper.mapper |
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pyworkflow.mapper.sqlite |
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pyworkflow.mapper.sqlite_db |
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pyworkflow.object |
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pyworkflow.plugin |
|
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pyworkflow.project |
|
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pyworkflow.project.config |
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pyworkflow.project.manager |
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|
pyworkflow.project.project |
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|
pyworkflow.project.usage |
|
|
pyworkflow.protocol |
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pyworkflow.protocol.bibtex |
|
|
pyworkflow.protocol.constants |
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pyworkflow.protocol.executor |
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pyworkflow.protocol.hosts |
|
|
pyworkflow.protocol.launch |
|
|
pyworkflow.protocol.package |
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pyworkflow.protocol.params |
|
|
pyworkflow.protocol.protocol |
|
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pyworkflow.template |
|
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pyworkflow.tests |
|
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pyworkflow.tests.test_utils |
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pyworkflow.tests.tests |
|
|
pyworkflow.utils |
|
|
pyworkflow.utils.dataset |
|
|
pyworkflow.utils.echo |
|
|
pyworkflow.utils.graph |
|
|
pyworkflow.utils.log |
|
|
pyworkflow.utils.path |
|
|
pyworkflow.utils.process |
|
|
pyworkflow.utils.profiler |
|
|
pyworkflow.utils.progressbar |
|
|
pyworkflow.utils.properties |
|
|
pyworkflow.utils.reflection |
|
|
pyworkflow.utils.utils |
|
|
pyworkflow.utils.which |
|
|
pyworkflow.viewer |
|
|
pyworkflow.webservices |
|
|
pyworkflow.webservices.config |
|
|
pyworkflow.webservices.notifier |
|
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pyworkflow.webservices.repository |
|
|
pyworkflow.webservices.workflowhub |
|
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pyworkflow.wizard |
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| | |
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s | |
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scipion |
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scipion.constants |
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scipion.guiplugin |
|
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scipion.install |
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scipion.install.change_rpath |
|
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scipion.install.clean |
|
|
scipion.install.find_deps |
|
|
scipion.install.funcs |
|
|
scipion.install.inspect_plugins |
|
|
scipion.install.install_plugin |
|
|
scipion.install.plugin_funcs |
|
|
scipion.install.plugin_manager |
|
|
scipion.install.update_manager |
|
|
scipion.scripts |
|
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scipion.scripts.config |
|
|
scipion.scripts.fontbrowser |
|
|
scipion.scripts.kickoff |
|
|
scipion.scripts.tutorial |
|
|
scipion.utils |
|
| | |
|
x | |
|
xmipp3 |
|
|
xmipp3.base |
|
|
xmipp3.bibtex |
|
|
xmipp3.constants |
|
|
xmipp3.convert |
|
|
xmipp3.convert.convert |
|
|
xmipp3.convert.dataimport |
|
|
xmipp3.convert.io_coordinates |
|
|
xmipp3.programs |
|
|
xmipp3.protocols |
|
|
xmipp3.protocols.protocol_align_volume |
|
|
xmipp3.protocols.protocol_align_volume_and_particles |
|
|
xmipp3.protocols.protocol_analyze_local_ctf |
|
|
xmipp3.protocols.protocol_angular_graph_consistency |
|
|
xmipp3.protocols.protocol_apply_alignment |
|
|
xmipp3.protocols.protocol_apply_tilt_to_ctf |
|
|
xmipp3.protocols.protocol_apply_transformation_matrix |
|
|
xmipp3.protocols.protocol_apply_zernike3d |
|
|
xmipp3.protocols.protocol_assignment_tilt_pair |
|
|
xmipp3.protocols.protocol_break_symmetry |
|
|
xmipp3.protocols.protocol_center_particles |
|
|
xmipp3.protocols.protocol_cl2d |
|
|
xmipp3.protocols.protocol_cl2d_align |
|
|
xmipp3.protocols.protocol_cl2d_clustering |
|
|
xmipp3.protocols.protocol_classes_2d_mapping |
|
|
xmipp3.protocols.protocol_classify_pca |
|
|
xmipp3.protocols.protocol_classify_pca_streaming |
|
|
xmipp3.protocols.protocol_compare_angles |
|
|
xmipp3.protocols.protocol_compare_reprojections |
|
|
xmipp3.protocols.protocol_compute_likelihood |
|
|
xmipp3.protocols.protocol_consensus_classes |
|
|
xmipp3.protocols.protocol_consensus_local_ctf |
|
|
xmipp3.protocols.protocol_convert_pdb |
|
|
xmipp3.protocols.protocol_core_analysis |
|
|
xmipp3.protocols.protocol_create_gallery |
|
|
xmipp3.protocols.protocol_ctf_consensus |
|
|
xmipp3.protocols.protocol_ctf_correct_wiener2d |
|
|
xmipp3.protocols.protocol_ctf_defocus_group |
|
|
xmipp3.protocols.protocol_ctf_micrographs |
|
|
xmipp3.protocols.protocol_deep_center |
|
|
xmipp3.protocols.protocol_deep_center_predict |
|
|
xmipp3.protocols.protocol_deep_hand |
|
|
xmipp3.protocols.protocol_deep_micrograph_screen |
|
|
xmipp3.protocols.protocol_denoise_particles |
|
|
xmipp3.protocols.protocol_eliminate_empty_images |
|
|
xmipp3.protocols.protocol_enrich |
|
|
xmipp3.protocols.protocol_extract_asymmetric_unit |
|
|
xmipp3.protocols.protocol_extract_particles |
|
|
xmipp3.protocols.protocol_extract_particles_movies |
|
|
xmipp3.protocols.protocol_extract_particles_pairs |
|
|
xmipp3.protocols.protocol_flexalign |
|
|
xmipp3.protocols.protocol_generate_reprojections |
|
|
xmipp3.protocols.protocol_helical_parameters |
|
|
xmipp3.protocols.protocol_kerdensom |
|
|
xmipp3.protocols.protocol_local_ctf |
|
|
xmipp3.protocols.protocol_mics_defocus_balancer |
|
|
xmipp3.protocols.protocol_ml2d |
|
|
xmipp3.protocols.protocol_movie_alignment_consensus |
|
|
xmipp3.protocols.protocol_movie_dose_analysis |
|
|
xmipp3.protocols.protocol_movie_gain |
|
|
xmipp3.protocols.protocol_movie_max_shift |
|
|
xmipp3.protocols.protocol_movie_split_frames |
|
|
xmipp3.protocols.protocol_multiple_fscs |
|
|
xmipp3.protocols.protocol_multireference_alignability |
|
|
xmipp3.protocols.protocol_normalize_strain |
|
|
xmipp3.protocols.protocol_particle_pick |
|
|
xmipp3.protocols.protocol_particle_pick_automatic |
|
|
xmipp3.protocols.protocol_particle_pick_consensus |
|
|
xmipp3.protocols.protocol_particle_pick_pairs |
|
|
xmipp3.protocols.protocol_particle_pick_remove_duplicates |
|
|
xmipp3.protocols.protocol_phantom_create |
|
|
xmipp3.protocols.protocol_pick_noise |
|
|
xmipp3.protocols.protocol_postProcessing_deepPostProcessing |
|
|
xmipp3.protocols.protocol_preprocess |
|
|
xmipp3.protocols.protocol_preprocess.geometrical_mask |
|
|
xmipp3.protocols.protocol_preprocess.protocol_add_noise |
|
|
xmipp3.protocols.protocol_preprocess.protocol_create_mask2d |
|
|
xmipp3.protocols.protocol_preprocess.protocol_create_mask3d |
|
|
xmipp3.protocols.protocol_preprocess.protocol_crop_resize |
|
|
xmipp3.protocols.protocol_preprocess.protocol_filter |
|
|
xmipp3.protocols.protocol_preprocess.protocol_image_operate |
|
|
xmipp3.protocols.protocol_preprocess.protocol_mask |
|
|
xmipp3.protocols.protocol_preprocess.protocol_movie_resize |
|
|
xmipp3.protocols.protocol_preprocess.protocol_preprocess |
|
|
xmipp3.protocols.protocol_preprocess.protocol_process |
|
|
xmipp3.protocols.protocol_preprocess_micrographs |
|
|
xmipp3.protocols.protocol_projmatch |
|
|
xmipp3.protocols.protocol_projmatch.projmatch_form |
|
|
xmipp3.protocols.protocol_projmatch.projmatch_initialize |
|
|
xmipp3.protocols.protocol_projmatch.projmatch_steps |
|
|
xmipp3.protocols.protocol_projmatch.protocol_projmatch |
|
|
xmipp3.protocols.protocol_random_conical_tilt |
|
|
xmipp3.protocols.protocol_ransac |
|
|
xmipp3.protocols.protocol_reconstruct_fourier |
|
|
xmipp3.protocols.protocol_reconstruct_highres |
|
|
xmipp3.protocols.protocol_reconstruct_significant |
|
|
xmipp3.protocols.protocol_reconstruct_swarm |
|
|
xmipp3.protocols.protocol_resolution3d |
|
|
xmipp3.protocols.protocol_resolution_bfactor |
|
|
xmipp3.protocols.protocol_resolution_deepres |
|
|
xmipp3.protocols.protocol_resolution_directional |
|
|
xmipp3.protocols.protocol_resolution_fso |
|
|
xmipp3.protocols.protocol_resolution_monogenic_signal |
|
|
xmipp3.protocols.protocol_rotate_volume |
|
|
xmipp3.protocols.protocol_rotational_symmetry |
|
|
xmipp3.protocols.protocol_screen_deepConsensus |
|
|
xmipp3.protocols.protocol_screen_particles |
|
|
xmipp3.protocols.protocol_shift_particles |
|
|
xmipp3.protocols.protocol_shift_volume |
|
|
xmipp3.protocols.protocol_simulate_ctf |
|
|
xmipp3.protocols.protocol_structure_map |
|
|
xmipp3.protocols.protocol_structure_map_zernike3d |
|
|
xmipp3.protocols.protocol_subtract_projection |
|
|
xmipp3.protocols.protocol_tilt_analysis |
|
|
xmipp3.protocols.protocol_trigger_data |
|
|
xmipp3.protocols.protocol_validate_fscq |
|
|
xmipp3.protocols.protocol_validate_nontilt |
|
|
xmipp3.protocols.protocol_validate_overfitting |
|
|
xmipp3.protocols.protocol_volume_adjust_sub |
|
|
xmipp3.protocols.protocol_volume_consensus |
|
|
xmipp3.protocols.protocol_volume_deform_zernike3d |
|
|
xmipp3.protocols.protocol_volume_local_adjust |
|
|
xmipp3.protocols.protocol_volume_local_sharpening |
|
|
xmipp3.protocols.protocol_volume_strain |
|
|
xmipp3.protocols.protocol_write_testC |
|
|
xmipp3.protocols.protocol_write_testP |
|
|
xmipp3.utils |
|
|
xmipp3.version |
|
|
xmipp3.viewers |
|
|
xmipp3.viewers.plotter |
|
|
xmipp3.viewers.viewer |
|
|
xmipp3.viewers.viewer_analyze_local_ctf |
|
|
xmipp3.viewers.viewer_apply_tilt_to_ctf |
|
|
xmipp3.viewers.viewer_cl2d |
|
|
xmipp3.viewers.viewer_cl2d_clustering |
|
|
xmipp3.viewers.viewer_consensus_classes |
|
|
xmipp3.viewers.viewer_ctf_consensus |
|
|
xmipp3.viewers.viewer_deep_consensus |
|
|
xmipp3.viewers.viewer_deep_micrograph_cleaner |
|
|
xmipp3.viewers.viewer_deepEMHancer |
|
|
xmipp3.viewers.viewer_dose_analysis |
|
|
xmipp3.viewers.viewer_eliminate_empty_images |
|
|
xmipp3.viewers.viewer_extract_asymmetric_unit |
|
|
xmipp3.viewers.viewer_LL_matrix |
|
|
xmipp3.viewers.viewer_local_sharpening |
|
|
xmipp3.viewers.viewer_ml2d |
|
|
xmipp3.viewers.viewer_movie_alignment |
|
|
xmipp3.viewers.viewer_normalize_strain |
|
|
xmipp3.viewers.viewer_pdb_deform_zernike3d |
|
|
xmipp3.viewers.viewer_projmatch |
|
|
xmipp3.viewers.viewer_ransac |
|
|
xmipp3.viewers.viewer_reconstruct_highres |
|
|
xmipp3.viewers.viewer_resolution3d |
|
|
xmipp3.viewers.viewer_resolution_bfactor |
|
|
xmipp3.viewers.viewer_resolution_deepres |
|
|
xmipp3.viewers.viewer_resolution_directional |
|
|
xmipp3.viewers.viewer_resolution_fso |
|
|
xmipp3.viewers.viewer_resolution_monogenic_signal |
|
|
xmipp3.viewers.viewer_structure_map |
|
|
xmipp3.viewers.viewer_subtract_projection |
|
|
xmipp3.viewers.viewer_swarm |
|
|
xmipp3.viewers.viewer_validate_fscq |
|
|
xmipp3.viewers.viewer_validate_nontilt |
|
|
xmipp3.viewers.viewer_validate_overfitting |
|
|
xmipp3.viewers.viewer_volume_consensus |
|
|
xmipp3.viewers.viewer_volume_deform_zernike3d |
|
|
xmipp3.viewers.viewer_volume_strain |
|
|
xmipp3.viewers.viewer_volume_subtraction |
|
|
xmipp3.wizards |
|