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pwem
pwem.bibtex
pwem.constants
pwem.convert
pwem.convert.atom_struct
pwem.convert.headers
pwem.convert.pdb_list
pwem.convert.sequence
pwem.convert.symmetry
pwem.convert.transformations
pwem.convert.trigonometry
pwem.convert.utils
pwem.emlib
pwem.emlib.image
pwem.emlib.image.image_handler
pwem.emlib.image.image_readers
pwem.emlib.lib
pwem.emlib.metadata
pwem.emlib.metadata.utils
pwem.objects
pwem.objects.data
pwem.objects.data_flexhub
pwem.objects.data_tiltpairs
pwem.protocols
pwem.protocols.parallel
pwem.protocols.protocol
pwem.protocols.protocol_2d
pwem.protocols.protocol_3d
pwem.protocols.protocol_align_movies
pwem.protocols.protocol_alignment_assign
pwem.protocols.protocol_alignment_invertHand
pwem.protocols.protocol_base_flexhub
pwem.protocols.protocol_batch
pwem.protocols.protocol_boxsize_checkpoint
pwem.protocols.protocol_boxsize_parameters
pwem.protocols.protocol_classes_selector
pwem.protocols.protocol_create_stream_data
pwem.protocols.protocol_ctf_assign
pwem.protocols.protocol_export
pwem.protocols.protocol_export.protocol_export_DB
pwem.protocols.protocol_extract_coordinates
pwem.protocols.protocol_import
pwem.protocols.protocol_import.base
pwem.protocols.protocol_import.coordinates
pwem.protocols.protocol_import.ctfs
pwem.protocols.protocol_import.dataimport
pwem.protocols.protocol_import.images
pwem.protocols.protocol_import.masks
pwem.protocols.protocol_import.micrographs
pwem.protocols.protocol_import.particles
pwem.protocols.protocol_import.sequence
pwem.protocols.protocol_import.volumes
pwem.protocols.protocol_mathematical_operator
pwem.protocols.protocol_micrographs
pwem.protocols.protocol_movie_eraser
pwem.protocols.protocol_movies
pwem.protocols.protocol_origin_sampling_volume
pwem.protocols.protocol_particles
pwem.protocols.protocol_particles_picking
pwem.protocols.protocol_pdf_report
pwem.protocols.protocol_projection_edit
pwem.protocols.protocol_set_editor
pwem.protocols.protocol_set_filter
pwem.protocols.protocol_sets
pwem.protocols.protocol_tests
pwem.protocols.protocol_tiltpairs
pwem.protocols.protocol_tools
pwem.protocols.protocol_wait
pwem.utils
pwem.viewers
pwem.viewers.filehandlers
pwem.viewers.plotter
pwem.viewers.showj
pwem.viewers.viewer_angular_dist
pwem.viewers.viewer_base
pwem.viewers.viewer_chimera
pwem.viewers.viewer_coordinates
pwem.viewers.viewer_fsc
pwem.viewers.viewer_localres
pwem.viewers.viewer_pdf
pwem.viewers.viewer_sequence
pwem.viewers.viewer_vmd
pwem.viewers.viewer_volumes
pwem.viewers.viewers_data
pwem.viewers.views
pwem.wizards
pwem.wizards.wizard
pwem.wizards.wizards
pwem.wizards.wizards_3d
pwem.wizards.wizards_3d.callbacks
pwem.wizards.wizards_3d.mask_structure_wizard
pwem.wizards.wizards_3d.mask_volume_wizard
pyworkflow
pyworkflow.apps
pyworkflow.apps.pw_manager
pyworkflow.apps.pw_plot
pyworkflow.apps.pw_project
pyworkflow.apps.pw_protocol_list
pyworkflow.apps.pw_protocol_run
pyworkflow.apps.pw_run_tests
pyworkflow.apps.pw_schedule_run
pyworkflow.apps.pw_sleep
pyworkflow.apps.pw_sync_data
pyworkflow.apps.pw_viewer
pyworkflow.config
pyworkflow.constants
pyworkflow.exceptions
pyworkflow.gui
pyworkflow.gui.browser
pyworkflow.gui.canvas
pyworkflow.gui.dialog
pyworkflow.gui.form
pyworkflow.gui.graph
pyworkflow.gui.graph_layout
pyworkflow.gui.gui
pyworkflow.gui.matplotlib_image
pyworkflow.gui.plotter
pyworkflow.gui.project
pyworkflow.gui.project.base
pyworkflow.gui.project.constants
pyworkflow.gui.project.labels
pyworkflow.gui.project.project
pyworkflow.gui.project.searchprotocol
pyworkflow.gui.project.searchrun
pyworkflow.gui.project.steps
pyworkflow.gui.project.utils
pyworkflow.gui.project.variables
pyworkflow.gui.project.viewdata
pyworkflow.gui.project.viewprojects
pyworkflow.gui.project.viewprotocols
pyworkflow.gui.project.viewprotocols_extra
pyworkflow.gui.text
pyworkflow.gui.tooltip
pyworkflow.gui.tree
pyworkflow.gui.widgets
pyworkflow.mapper
pyworkflow.mapper.mapper
pyworkflow.mapper.sqlite
pyworkflow.mapper.sqlite_db
pyworkflow.object
pyworkflow.plugin
pyworkflow.project
pyworkflow.project.config
pyworkflow.project.manager
pyworkflow.project.project
pyworkflow.protocol
pyworkflow.protocol.bibtex
pyworkflow.protocol.constants
pyworkflow.protocol.executor
pyworkflow.protocol.hosts
pyworkflow.protocol.launch
pyworkflow.protocol.package
pyworkflow.protocol.params
pyworkflow.protocol.protocol
pyworkflow.template
pyworkflow.tests
pyworkflow.tests.test_utils
pyworkflow.tests.tests
pyworkflow.utils
pyworkflow.utils.dataset
pyworkflow.utils.echo
pyworkflow.utils.graph
pyworkflow.utils.log
pyworkflow.utils.path
pyworkflow.utils.process
pyworkflow.utils.profiler
pyworkflow.utils.progressbar
pyworkflow.utils.properties
pyworkflow.utils.reflection
pyworkflow.utils.utils
pyworkflow.utils.which
pyworkflow.viewer
pyworkflow.webservices
pyworkflow.webservices.config
pyworkflow.webservices.notifier
pyworkflow.webservices.repository
pyworkflow.webservices.workflowhub
pyworkflow.wizard
scipion
scipion.constants
scipion.guiplugin
scipion.install
scipion.install.change_rpath
scipion.install.clean
scipion.install.find_deps
scipion.install.funcs
scipion.install.inspect_plugins
scipion.install.install_plugin
scipion.install.plugin_funcs
scipion.install.plugin_manager
scipion.install.update_manager
scipion.scripts
scipion.scripts.config
scipion.scripts.fontbrowser
scipion.scripts.kickoff
scipion.scripts.tutorial
scipion.utils
xmipp3
xmipp3.base
xmipp3.bibtex
xmipp3.constants
xmipp3.convert
xmipp3.convert.convert
xmipp3.convert.dataimport
xmipp3.convert.io_coordinates
xmipp3.programs
xmipp3.protocols
xmipp3.protocols.protocol_align_volume
xmipp3.protocols.protocol_align_volume_and_particles
xmipp3.protocols.protocol_analyze_local_ctf
xmipp3.protocols.protocol_angular_graph_consistency
xmipp3.protocols.protocol_apply_alignment
xmipp3.protocols.protocol_apply_tilt_to_ctf
xmipp3.protocols.protocol_apply_transformation_matrix
xmipp3.protocols.protocol_apply_zernike3d
xmipp3.protocols.protocol_assignment_tilt_pair
xmipp3.protocols.protocol_break_symmetry
xmipp3.protocols.protocol_center_particles
xmipp3.protocols.protocol_cl2d
xmipp3.protocols.protocol_cl2d_align
xmipp3.protocols.protocol_cl2d_clustering
xmipp3.protocols.protocol_classes_2d_mapping
xmipp3.protocols.protocol_classify_pca
xmipp3.protocols.protocol_classify_pca_streaming
xmipp3.protocols.protocol_compare_angles
xmipp3.protocols.protocol_compare_reprojections
xmipp3.protocols.protocol_consensus_classes
xmipp3.protocols.protocol_consensus_local_ctf
xmipp3.protocols.protocol_convert_pdb
xmipp3.protocols.protocol_core_analysis
xmipp3.protocols.protocol_create_gallery
xmipp3.protocols.protocol_ctf_consensus
xmipp3.protocols.protocol_ctf_correct_wiener2d
xmipp3.protocols.protocol_ctf_defocus_group
xmipp3.protocols.protocol_ctf_micrographs
xmipp3.protocols.protocol_deep_center
xmipp3.protocols.protocol_deep_center_predict
xmipp3.protocols.protocol_deep_hand
xmipp3.protocols.protocol_deep_micrograph_screen
xmipp3.protocols.protocol_denoise_particles
xmipp3.protocols.protocol_eliminate_empty_images
xmipp3.protocols.protocol_enrich
xmipp3.protocols.protocol_extract_asymmetric_unit
xmipp3.protocols.protocol_extract_particles
xmipp3.protocols.protocol_extract_particles_movies
xmipp3.protocols.protocol_extract_particles_pairs
xmipp3.protocols.protocol_flexalign
xmipp3.protocols.protocol_generate_reprojections
xmipp3.protocols.protocol_helical_parameters
xmipp3.protocols.protocol_kerdensom
xmipp3.protocols.protocol_local_ctf
xmipp3.protocols.protocol_mics_defocus_balancer
xmipp3.protocols.protocol_ml2d
xmipp3.protocols.protocol_movie_alignment_consensus
xmipp3.protocols.protocol_movie_dose_analysis
xmipp3.protocols.protocol_movie_gain
xmipp3.protocols.protocol_movie_max_shift
xmipp3.protocols.protocol_movie_split_frames
xmipp3.protocols.protocol_multiple_fscs
xmipp3.protocols.protocol_multireference_alignability
xmipp3.protocols.protocol_normalize_strain
xmipp3.protocols.protocol_particle_pick
xmipp3.protocols.protocol_particle_pick_automatic
xmipp3.protocols.protocol_particle_pick_consensus
xmipp3.protocols.protocol_particle_pick_pairs
xmipp3.protocols.protocol_particle_pick_remove_duplicates
xmipp3.protocols.protocol_phantom_create
xmipp3.protocols.protocol_pick_noise
xmipp3.protocols.protocol_postProcessing_deepPostProcessing
xmipp3.protocols.protocol_preprocess
xmipp3.protocols.protocol_preprocess.geometrical_mask
xmipp3.protocols.protocol_preprocess.protocol_add_noise
xmipp3.protocols.protocol_preprocess.protocol_create_mask2d
xmipp3.protocols.protocol_preprocess.protocol_create_mask3d
xmipp3.protocols.protocol_preprocess.protocol_crop_resize
xmipp3.protocols.protocol_preprocess.protocol_filter
xmipp3.protocols.protocol_preprocess.protocol_image_operate
xmipp3.protocols.protocol_preprocess.protocol_mask
xmipp3.protocols.protocol_preprocess.protocol_movie_resize
xmipp3.protocols.protocol_preprocess.protocol_preprocess
xmipp3.protocols.protocol_preprocess.protocol_process
xmipp3.protocols.protocol_preprocess_micrographs
xmipp3.protocols.protocol_projmatch
xmipp3.protocols.protocol_projmatch.projmatch_form
xmipp3.protocols.protocol_projmatch.projmatch_initialize
xmipp3.protocols.protocol_projmatch.projmatch_steps
xmipp3.protocols.protocol_projmatch.protocol_projmatch
xmipp3.protocols.protocol_random_conical_tilt
xmipp3.protocols.protocol_ransac
xmipp3.protocols.protocol_reconstruct_fourier
xmipp3.protocols.protocol_reconstruct_highres
xmipp3.protocols.protocol_reconstruct_significant
xmipp3.protocols.protocol_reconstruct_swarm
xmipp3.protocols.protocol_resolution3d
xmipp3.protocols.protocol_resolution_bfactor
xmipp3.protocols.protocol_resolution_deepres
xmipp3.protocols.protocol_resolution_directional
xmipp3.protocols.protocol_resolution_fso
xmipp3.protocols.protocol_resolution_monogenic_signal
xmipp3.protocols.protocol_rotate_volume
xmipp3.protocols.protocol_rotational_symmetry
xmipp3.protocols.protocol_screen_deepConsensus
xmipp3.protocols.protocol_screen_deeplearning
xmipp3.protocols.protocol_screen_particles
xmipp3.protocols.protocol_shift_particles
xmipp3.protocols.protocol_shift_volume
xmipp3.protocols.protocol_simulate_ctf
xmipp3.protocols.protocol_structure_map
xmipp3.protocols.protocol_structure_map_zernike3d
xmipp3.protocols.protocol_subtract_projection
xmipp3.protocols.protocol_tilt_analysis
xmipp3.protocols.protocol_trigger_data
xmipp3.protocols.protocol_validate_fscq
xmipp3.protocols.protocol_validate_nontilt
xmipp3.protocols.protocol_validate_overfitting
xmipp3.protocols.protocol_volume_adjust_sub
xmipp3.protocols.protocol_volume_consensus
xmipp3.protocols.protocol_volume_deform_zernike3d
xmipp3.protocols.protocol_volume_local_adjust
xmipp3.protocols.protocol_volume_local_sharpening
xmipp3.protocols.protocol_volume_strain
xmipp3.protocols.protocol_write_testC
xmipp3.protocols.protocol_write_testP
xmipp3.utils
xmipp3.version
xmipp3.viewers.plotter
xmipp3.viewers.viewer