pwem.wizards.wizards_3d.mask_volume_wizard module

class pwem.wizards.wizards_3d.mask_volume_wizard.MaskVolumeWizard(filename)[source]

Bases: object

Create a mask for a volume interactively. Masks currently implemented: - Spherical mask

changeThreshold(threshold)[source]

change_view(event)[source]

downsamplingPC(voxel_size)[source]

get_sphere_params(mass_center=True)[source]: Return x,y,z,r array. Two possible conventions are implemented: - Bottom Left Corner (All Coordinates positive) - Center of Mass (Coordinates can be positive or negative) – Default

initializePlot()[source]

is_window_closed()[source]

on_release(event)[source]

plotScatter()[source]

plot_sphere(radius)[source]

press_shift(event)[source]

release_shift(event)[source]

remove_outliers()[source]

set_axes_equal(ax: Axes)[source]

Set 3D plot axes to equal scale.

Make axes of 3D plot have equal scale so that spheres appear as spheres and cubes as cubes. Required since ax.axis(‘equal’) and ax.set_aspect(‘equal’) don’t work on 3D.