pwem.protocols.protocol_import.dataimport module

class pwem.protocols.protocol_import.dataimport.ScipionImport(protocol, sqliteFile)

Bases: object

Import

getMicCTF(mic)

Retrieve the CTF associated to this micrograph.

importCoordinates(inputMics)

Import a SetOfCoordinates from a given sqlite file.

importMicrographs()

Import a SetOfMicrographs from a given sqlite file.

importParticles()

Import particles from a metadata ‘images.xmd’

loadAcquisitionInfo()

Return a dictionary with acquisition values and the sampling rate information. In the case of Scipion, these values will be read from the ‘Properties’ table of the particles.sqlite file.

validate()

Try to find errors on import.

validateMicrographs()

validateParticles()