xmipp3.protocols.protocol_validate_fscq module

class xmipp3.protocols.protocol_validate_fscq.XmippProtValFit(**args)

Bases: ProtAnalysis3D

The protocol assesses the quality of the fit.

assignPdbStep()

convertInputStep()

Convert inputs to desired format.

createOutputStep()

getFSCQFile() → str

### This function returns the filename for FSCQ’s value file.

#### Returns: - (str): FSCQ’s value file’s full name with extension.

getFscqAttrDic()

getInputStruct()

getInputStructCIF() → str

### This function returns the full path for the input Atom Struct file in cif format. #### If file is not in cif format, it is converted to it.

#### Returns: - (str): Input Atom Struct’s file’s path.

getInputStructFile()

getNormFSCQFile() → str

### This function returns the filename for FSCQ’s norm file.

#### Returns: - (str): FSCQ’s norm file’s full name with extension.

getStructExtension() → str

### This function returns the expected extension for the Atom Struct file.

#### Returns: - (str): Atom Struct’s file’s extension.

getStructFile() → str

### This function returns the full path for the Atom Struct file.

#### Returns: - (str): Atom Struct’s file’s path.

isStructExtensionValid() → bool

### This function returns True if the input struct extension is one of the accepted types.

#### Returns: - (bool): True if the input struct has an accepted extension. False otherwise.

runBlocresStep(i)

substractBlocresStep()