pyworkflow.protocol.hosts module

This modules contains classes to store information about execution hosts.

class pyworkflow.protocol.hosts.HostConfig(**kwargs)

Bases: Object

Main store the configuration for execution hosts.

getAddress()

getCancelCommand()

getCheckCommand()

getHostName()

getHostPath()

getJobDoneRegex()

getLabel()

getMpiCommand()

getPassword()

getQueueSystem()

getQueuesDefault()

getScipionConfig()

From which file to read the configuration file in this hosts.

getScipionHome()

Return the path where Scipion is installed in the host.

getSubmitCommand()

getSubmitPrefix()

getSubmitTemplate()

getUserName()

isQueueMandatory()

classmethod load(hostsConf)

Load several hosts from a configuration file. Return an dictionary with hostName -> hostConfig pairs.

setAddress(newAddress)

setHostName(hostName)

setHostPath(hostPath)

setLabel(label)

setMpiCommand(mpiCommand)

setPassword(password)

setQueueSystem(queueSystem)

setScipionConfig(newConfig)

setScipionHome(newScipionHome)

setUserName(userName)

classmethod writeBasic(configFn)

Write a very basic Host configuration for testing purposes.

class pyworkflow.protocol.hosts.QueueSystemConfig(**kwargs)

Bases: Object

getCancelCommand()

getCheckCommand()

getMandatory()

getName()

getQueueConfig(objId)

getQueues()

getSubmitCommand()

getSubmitTemplate()

hasName()

hasValue()

setCancelCommand(cancelCommand)

setCheckCommand(checkCommand)

setJobDoneRegex(jobDoneRegex)

setMandatory(mandatory)

setName(name)

setQueues(queues)

setSubmitCommand(submitCommand)

setSubmitTemplate(submitTemplate)