pwem.protocols.protocol_boxsize_parameters module

class pwem.protocols.protocol_boxsize_parameters.ProtBoxSizeParameters(**args)[source]

Bases: EMProtocol

Protocol to make mathematical operations on particle picking boxsize. For sanity check all the generated outputs are even numbers.

applyFormulaStep(boxSize, samplingRate)[source]: Applies the formula to each of the parameters selected by the user.

calculateConsensusParams(boxSize)[source]

calculateGautomatchParams(boxSize, samplingRate)[source]

calculateParticleExtractionParams(boxSize)[source]

calculateRelionParams(boxSize, samplingRate)[source]

calculateTopazParams(boxSize)[source]

createOutput(modifiedSet)[source]

createResultsOutput()[source]: The output can be an Integer, Float or String. Other protocols can use it in those Params if it has set allowsPointer=True

initParams()[source]

outputsToDefine = {}

registerEvenBoxSize(boxSize)[source]

registerOutput(outputName, value)[source]

pwem.protocols.protocol_boxsize_parameters.transform2EvenNumber(var)[source]