xmipp3.convert.dataimport module

class xmipp3.convert.dataimport.XmippImport(protocol, mdFile)

Bases: object

Class used to import different kind of objects from Xmipp projects into Scipion.

getBoxSize(coordFile)

Try to infer the box size from the given coordinate file.

importCTF(mic, fileName)

importCoordinates(fileName, addCoordinate)

importMicrographs()

Import a SetOfMicrographs from a given micrograph metadata. (usually the result “micrographs.xmd” from Xmipp protocols) If the CTF is found, a SetOfCTF will be also created.

importParticles()

Import particles from a metadata ‘images.xmd’

loadAcquisitionInfo()

Return a dictionary with acquisition values and the sampling rate information. In the case of Xmipp, they are stored in files: acquisition_info.xmd and microscope.xmd

validate(label)

Try to find errors on import.

validateMicrographs()

validateParticles()