xmipp3.protocols.protocol_deep_micrograph_screen module

class xmipp3.protocols.protocol_deep_micrograph_screen.XmippProtDeepMicrographScreen(**kwargs)[source]

Bases: ProtExtractParticles, XmippProtocol

Removes coordinates located in carbon regions or large impurities in micrographs using a pre-trained deep learning model. This screening improves particle picking accuracy by filtering out false positives from contaminated areas.

extractMicrographListStepOwn(micKeyList, *args)[source]

getAutoSuffix()[source]

getBoxScale()[source]: Computing the sampling factor between input and output. We should take into account the differences in sampling rate between micrographs used for picking and the ones used for extraction. The downsampling factor could also affect the resulting scale.

getBoxSize()[source]

getCoordSampling()[source]

getCoords()[source]

getDoneMics()[source]

getInputMicrographs()[source]: Return the micrographs associated to the SetOfCoordinates or Other micrographs.

getInputMicrographsPointer()[source]: Return the micrographs pointer associated to the SetOfCoordinates or Other micrographs.

getMicSampling()[source]

getOutput()[source]

getOutputName()[source]

notOne(value)[source]

registerCoords(coordsDir)[source]: This method is usually inherited by all Pickers and it is used from the Java picking GUI to register a new SetOfCoordinates when the user click on +Particles button.