xmipp3.protocols.protocol_classes_2d_mapping module

class xmipp3.protocols.protocol_classes_2d_mapping.ScatterImageMarker(img_paths, pos, ids, occupancy=None, prevsel=None)[source]

Bases: object

imScatter(image, x, y, imid, edge_color=None)[source]
initializePlot()[source]
is_window_closed(event)[source]
readImages(img_paths)[source]
setPickCallback()[source]
setRectangleSelector()[source]
setSelectionButtons()[source]
setSliderCallback()[source]
updatePatch(ind)[source]
class xmipp3.protocols.protocol_classes_2d_mapping.XmippProtCL2DMap(**args)[source]

Bases: pwem.protocols.protocol_2d.ProtAnalysis2D

Create a low dimensional mapping from a SetOfClasses2D with interactive selection of classes. Use mouse left-click to select/deselect classes individually or mouse right-click to select/deselect several classes.

CLASSES_MD = 'classes.xmd'
computeMappingStep()[source]
convertStep()[source]
distances = ['Euclidean', 'Correlation']
interactiveSelStep()[source]
isSelected(cls)[source]
red_methods = ['PCA', 'LTSA', 'DM', 'LLTSA', 'LPP', 'kPCA', 'pPCA', 'LE', 'HLLE', 'SPE', 'NPE']