xmipp3.protocols.protocol_classes_2d_mapping module

class xmipp3.protocols.protocol_classes_2d_mapping.ScatterImageMarker(img_paths, pos, ids, occupancy=None, prevsel=None)[source]

Bases: object

imScatter(image, x, y, imid, edge_color=None)[source]

initializePlot()[source]

is_window_closed(event)[source]

readImages(img_paths)[source]

setPickCallback()[source]

setRectangleSelector()[source]

setSelectionButtons()[source]

setSliderCallback()[source]

updatePatch(ind)[source]

class xmipp3.protocols.protocol_classes_2d_mapping.XmippProtCL2DMap(**args)[source]

Bases: ProtAnalysis2D

Create a low dimensional mapping from a SetOfClasses2D with interactive selection of classes. Use mouse left-click to select/deselect classes individually or mouse right-click to select/deselect several classes.

CLASSES_MD = 'classes.xmd'

computeMappingStep()[source]

convertStep()[source]

distances = ['Euclidean', 'Correlation']

interactiveSelStep()[source]

isSelected(cls)[source]

red_methods = ['PCA', 'LTSA', 'DM', 'LLTSA', 'LPP', 'kPCA', 'pPCA', 'LE', 'HLLE', 'SPE', 'NPE']