xmipp3.wizards module

class xmipp3.wizards.ColorScaleWizard[source]: Bases: ColorScaleWizardBase

class xmipp3.wizards.XmippBoxSizeWizard[source]

Bases: Wizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippCL2DNumberOfClassesWizard[source]

Bases: Wizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippCTFWizard[source]

Bases: CtfWizard

getAutodownsampling(protocol, coeff=1.5)[source]

classmethod getView()[source]: EMPTY METHOD. Deprecated.This method should return the string value of the view in web that will respond to this wizard. This method only should be implemented in those wizards that have WEB_DJANGO environment defined.

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippDownsampleWizard[source]

Bases: DownsampleWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippFilterParticlesWizard[source]

Bases: FilterParticlesWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippFilterVolumesWizard[source]

Bases: FilterVolumesWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippGaussianParticlesWizard[source]

Bases: GaussianParticlesWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippGaussianVolumesWizard[source]

Bases: GaussianVolumesWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippParticleConsensusRadiusWizard[source]

Bases: Wizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippParticleMaskRadiiWizard[source]

Bases: ParticlesMaskRadiiWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippParticleMaskRadiusWizard[source]

Bases: ParticleMaskRadiusWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippSelectPointinVolWizard[source]

Bases: EmWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippVolumeInnerRadiusWizard[source]: Bases: XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeMaskRadiusBasicWizard[source]

Bases: VolumeMaskRadiusWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.XmippVolumeMaskRadiusProjMWizard[source]: Bases: XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard[source]: Bases: XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard2[source]: Bases: XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard3[source]: Bases: XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeOuterRadiusWizard[source]: Bases: XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeRadiiProjMWizard[source]: Bases: XmippVolumeRadiiWizard

class xmipp3.wizards.XmippVolumeRadiiWizard[source]

Bases: VolumeMaskRadiiWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.

class xmipp3.wizards.Zernike3DMaskWizard[source]

Bases: VolumeMaskRadiusWizard

show(form)[source]

EMPTY METHOD. Needs to be implemented in your class. This will be called to show the wizard.

Parameters

form – the protocol form, given access to to all parameters. Some times the same wizard will modify several elements in the form.
params – a list of params to modify. Sometimes the wizard can be generic and can be used for different parameters in the same form.