xmipp3.protocols.protocol_preprocess.protocol_filter module

Protocols for particles filter operations.

class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippFilterHelper[source]

Bases: object

Filter operations such as: Fourier or Gaussian.

FM_ADAPTIVE_SOFT = 3

FM_BAND_PASS = 2

FM_BAYESIAN = 1

FM_CENTRAL = 4

FM_CTF = 3

FM_DAUB12 = 1

FM_DAUB20 = 2

FM_DAUB4 = 0

FM_HIGH_PASS = 1

FM_LOW_PASS = 0

FM_MEDIAN = 0

FM_REMOVE_SCALE = 0

FM_SOFT_THRESHOLDING = 2

classmethod getFreqDecay(protocol)[source]

classmethod getHighFreq(protocol)[source]

getInputSampling()[source]: Function to return the sampling rate of input objects. Should be implemented for filter volumes and particles.

classmethod getLowFreq(protocol)[source]

classmethod getModesCondition(filterMode, *filterModes)[source]

class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippProtFilterParticles(**kwargs)[source]

Bases: ProtFilterParticles, XmippProcessParticles

Apply Fourier filters to a set of particles

convertCTFXmippStep(ctfModel)[source]

filterStep(args)[source]

getFreqDecay()[source]

getHighFreq()[source]

getInputSampling()[source]

getLowFreq()[source]

tmpCTF = 'ctf.xmd'

class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippProtFilterVolumes(**kwargs)[source]

Bases: ProtFilterVolumes, XmippProcessVolumes

Apply Fourier filters to a set of volumes

filterStep(args)[source]

getFreqDecay()[source]

getHighFreq()[source]

getInputSampling()[source]

getLowFreq()[source]