xmipp3.protocols.protocol_movie_dose_analysis module

class xmipp3.protocols.protocol_movie_dose_analysis.XmippProtMovieDoseAnalysis(**args)[source]

Bases: ProtProcessMovies

Analyzes the electron dose applied throughout a movie acquisition. This protocol helps assess dose accumulation and its effects on image quality, providing information essential for dose weighting and optimizing reconstruction..

PARALLEL_BATCH_SIZE = 8

createOutputStep()[source]

estimatePoissonCount(movie)[source]

finished = False

getDoseDiffPlot()[source]

getDosePlot()[source]

getLimitIntervals()[source]: Funtion to obtain the acceptance interval limits.

initializeStep()[source]

meanDoseList = []

meanGlobal = 0

medianDifferences = []

medianDoseTemporal = []

stats = {}

usingExperimental = False

xmipp3.protocols.protocol_movie_dose_analysis.computeStats(mean_frames)[source]

xmipp3.protocols.protocol_movie_dose_analysis.plotDoseAnalysis(filename, doseValues, medianGlobal, lower, upper)[source]

xmipp3.protocols.protocol_movie_dose_analysis.plotDoseAnalysisDiff(filename, medianDifferences)[source]

xmipp3.protocols.protocol_movie_dose_analysis.setAttribute(obj, label, value)[source]