xmipp3.protocols.protocol_extract_particles module
- class xmipp3.protocols.protocol_extract_particles.XmippProtExtractParticles(**kwargs)[source]
Bases:
ProtExtractParticles
,XmippProtocol
Extracts particle images from micrographs based on provided coordinates. This essential step prepares particle stacks for further processing such as classification and reconstruction.
- RESIZE_DIMENSIONS = 1
- RESIZE_FACTOR = 0
- RESIZE_SAMPLINGRATE = 2
- getBoxScale()[source]
Computing the sampling factor between input and output. We should take into account the differences in sampling rate between micrographs used for picking and the ones used for extraction. The downsampling factor could also affect the resulting scale.