pwem.protocols.protocol_boxsize_checkpoint module

class pwem.protocols.protocol_boxsize_checkpoint.ProtBoxSizeCheckpoint(**args)

Bases: EMProtocol

Protocol to make a validation operations on particle picking boxsize. For sanity check all the generated outputs are even numbers.

applyComparisonStep(boxSize1, boxSize2)

Applies the formula to make the comparison of the two box size. It has four cases:

• Stays within the limits of the maximum proportional difference and outputs the average box size (default).

• Stays within the limits of the maximum proportional difference and outputs the primary reference.

• Goes out of the maximum proportional difference and outputs the primary reference (default).

• Goes out of the maximum proportional difference and outputs the average box size.

createOutput(modifiedSet)

createResultsOutput()

The output is an even Integer. Other protocols can use it in those Params if it has set allowsPointer=True

getActions()

getTimeOutInSeconds(timeOut)

initParams()

outputsToDefine = {}

registerEvenBoxSize(boxSize)

registerOutput(outputName, value)

stopWait()

waitingHasFinished()

waitingStep()

pwem.protocols.protocol_boxsize_checkpoint.transform2EvenNumber(var)