Scipion
Set up
Installing Scipion
Scipion configuration
Host configuration
Troubleshooting
User documentation
Graphical interface manuals
Image processing resources
Tutorials
Processing How To’s
Facilities
On-the-fly processing
Streaming workflows
Summary Reports
Developer documentation
Developers Page
API Documentation
Scipion API
Plugins API
xmipp3 package
xmipp3.convert package
xmipp3.protocols package
xmipp3.protocols.protocol_preprocess package
xmipp3.protocols.protocol_projmatch package
xmipp3.protocols.protocol_align_volume module
xmipp3.protocols.protocol_align_volume_and_particles module
xmipp3.protocols.protocol_analyze_local_ctf module
xmipp3.protocols.protocol_angular_graph_consistency module
xmipp3.protocols.protocol_angular_resolution_alignment module
xmipp3.protocols.protocol_apply_alignment module
xmipp3.protocols.protocol_apply_transformation_matrix module
xmipp3.protocols.protocol_apply_zernike3d module
xmipp3.protocols.protocol_assignment_tilt_pair module
xmipp3.protocols.protocol_break_symmetry module
xmipp3.protocols.protocol_center_particles module
xmipp3.protocols.protocol_cl2d module
xmipp3.protocols.protocol_cl2d_align module
xmipp3.protocols.protocol_classes_2d_mapping module
xmipp3.protocols.protocol_classify_pca module
xmipp3.protocols.protocol_classify_pca_streaming module
xmipp3.protocols.protocol_compare_angles module
xmipp3.protocols.protocol_compare_reprojections module
xmipp3.protocols.protocol_consensus_classes module
xmipp3.protocols.protocol_consensus_local_ctf module
xmipp3.protocols.protocol_convert_pdb module
xmipp3.protocols.protocol_core_analysis module
xmipp3.protocols.protocol_create_gallery module
xmipp3.protocols.protocol_ctf_consensus module
xmipp3.protocols.protocol_ctf_correct_wiener2d module
xmipp3.protocols.protocol_ctf_defocus_group module
xmipp3.protocols.protocol_ctf_micrographs module
xmipp3.protocols.protocol_deep_center module
xmipp3.protocols.protocol_deep_hand module
xmipp3.protocols.protocol_deep_micrograph_screen module
xmipp3.protocols.protocol_denoise_particles module
xmipp3.protocols.protocol_eliminate_empty_images module
xmipp3.protocols.protocol_enrich module
xmipp3.protocols.protocol_extract_asymmetric_unit module
xmipp3.protocols.protocol_extract_particles module
xmipp3.protocols.protocol_extract_particles_movies module
xmipp3.protocols.protocol_extract_particles_pairs module
xmipp3.protocols.protocol_flexalign module
xmipp3.protocols.protocol_generate_reprojections module
xmipp3.protocols.protocol_helical_parameters module
xmipp3.protocols.protocol_kerdensom module
xmipp3.protocols.protocol_local_ctf module
xmipp3.protocols.protocol_ml2d module
xmipp3.protocols.protocol_movie_alignment_consensus module
xmipp3.protocols.protocol_movie_dose_analysis module
xmipp3.protocols.protocol_movie_gain module
xmipp3.protocols.protocol_movie_max_shift module
xmipp3.protocols.protocol_movie_opticalflow module
xmipp3.protocols.protocol_movie_split_frames module
xmipp3.protocols.protocol_multiple_fscs module
xmipp3.protocols.protocol_multireference_alignability module
xmipp3.protocols.protocol_normalize_strain module
xmipp3.protocols.protocol_particle_pick module
xmipp3.protocols.protocol_particle_pick_automatic module
xmipp3.protocols.protocol_particle_pick_consensus module
xmipp3.protocols.protocol_particle_pick_pairs module
xmipp3.protocols.protocol_particle_pick_remove_duplicates module
xmipp3.protocols.protocol_phantom_create module
xmipp3.protocols.protocol_pick_noise module
xmipp3.protocols.protocol_postProcessing_deepPostProcessing module
xmipp3.protocols.protocol_preprocess_micrographs module
xmipp3.protocols.protocol_random_conical_tilt module
xmipp3.protocols.protocol_ransac module
xmipp3.protocols.protocol_reconstruct_fourier module
xmipp3.protocols.protocol_reconstruct_highres module
xmipp3.protocols.protocol_reconstruct_significant module
xmipp3.protocols.protocol_reconstruct_swarm module
xmipp3.protocols.protocol_resolution3d module
xmipp3.protocols.protocol_resolution_bfactor module
xmipp3.protocols.protocol_resolution_deepres module
xmipp3.protocols.protocol_resolution_directional module
xmipp3.protocols.protocol_resolution_fso module
xmipp3.protocols.protocol_resolution_monogenic_signal module
xmipp3.protocols.protocol_rotate_volume module
xmipp3.protocols.protocol_rotational_symmetry module
xmipp3.protocols.protocol_screen_deepConsensus module
xmipp3.protocols.protocol_screen_deeplearning module
xmipp3.protocols.protocol_screen_particles module
xmipp3.protocols.protocol_shift_particles module
xmipp3.protocols.protocol_shift_volume module
xmipp3.protocols.protocol_simulate_ctf module
xmipp3.protocols.protocol_structure_map module
xmipp3.protocols.protocol_structure_map_zernike3d module
xmipp3.protocols.protocol_subtract_projection module
xmipp3.protocols.protocol_tilt_analysis module
xmipp3.protocols.protocol_trigger_data module
xmipp3.protocols.protocol_validate_fscq module
xmipp3.protocols.protocol_validate_nontilt module
xmipp3.protocols.protocol_validate_overfitting module
xmipp3.protocols.protocol_volume_adjust_sub module
xmipp3.protocols.protocol_volume_consensus module
xmipp3.protocols.protocol_volume_deform_zernike3d module
xmipp3.protocols.protocol_volume_local_adjust module
xmipp3.protocols.protocol_volume_local_sharpening module
xmipp3.protocols.protocol_volume_strain module
xmipp3.protocols.protocol_write_testC module
xmipp3.protocols.protocol_write_testP module
xmipp3.viewers package
xmipp3.base module
xmipp3.bibtex module
xmipp3.constants module
xmipp3.programs module
xmipp3.utils module
xmipp3.wizards module
Xmipp API
Get in touch
Contact Us
Licences
Licenses
Scipion
»
Plugins API
»
xmipp3 package
»
xmipp3.protocols package
»
xmipp3.protocols.protocol_apply_zernike3d module
View page source
xmipp3.protocols.protocol_apply_zernike3d module