pwem.protocols.protocol_3d module

In this module are protocol base classes related to 2D processing

class pwem.protocols.protocol_3d.Prot3D(**kwargs)[source]: Bases: EMProtocol

class pwem.protocols.protocol_3d.ProtAlignVolume(**kwargs)[source]

Bases: ProtPreprocessVolumes

Protocol base for Align volumes protocols

class pwem.protocols.protocol_3d.ProtAnalysis3D(**kwargs)[source]: Bases: Prot3D

class pwem.protocols.protocol_3d.ProtClassify3D(**kwargs)[source]: Bases: Prot3D

class pwem.protocols.protocol_3d.ProtCreateMask3D(**kwargs)[source]: Bases: ProtPreprocessVolumes

class pwem.protocols.protocol_3d.ProtFilterVolumes(**kwargs)[source]

Bases: ProtPreprocessVolumes

This is the base for the branch of filters, between the ProtPreprocessVolumes

class pwem.protocols.protocol_3d.ProtFitting3D(**kwargs)[source]: Bases: Prot3D

class pwem.protocols.protocol_3d.ProtInitialVolume(**kwargs)[source]

Bases: Prot3D

Protocol base for Initial volumes protocols

class pwem.protocols.protocol_3d.ProtMaskVolumes(**kwargs)[source]

Bases: ProtPreprocessVolumes

This is the base for the branch of mask, between the ProtPreprocessVolumes

class pwem.protocols.protocol_3d.ProtOperateVolumes(**args)[source]

Bases: ProtPreprocessVolumes

This is the base for the branch of operations, between the ProtPreprocessParticles

class pwem.protocols.protocol_3d.ProtPreprocessVolumes(**kwargs)[source]

Bases: Prot3D

This class will serve as a base for all protocol that performs some operation on Volumes (i.e. filters, mask, resize, etc) It is mainly defined by an inputVolumes and outputVolumes.

class pwem.protocols.protocol_3d.ProtReconstruct3D(**kwargs)[source]: Bases: Prot3D

class pwem.protocols.protocol_3d.ProtRefine3D(**kwargs)[source]: Bases: Prot3D