pwem.wizards.wizards module

This module is for Actual wizards to be able to be discovered from the Domain. wizard.py is left for wizard models and base classes.

class pwem.wizards.wizards.ChangeOriginSamplingWizard[source]

Bases: pyworkflow.wizard.Wizard

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.GetStructureChainsWizard[source]

Bases: pyworkflow.wizard.Wizard

Load an atomic structure, parse chain related information as name, number of residues, list of aminoacids (or other residues)

editionListOfChains(listOfChains)[source]
classmethod getModelsChainsStep(protocol)[source]

Returns (1) list with the information {“model”: %d, “chain”: “%s”, “residues”: %d} (modelsLength) (2) list with residues, position and chain (modelsFirstResidue)

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.ImportAcquisitionWizard[source]

Bases: pwem.wizards.wizard.EmWizard

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.ImportCoordinatesBoxSizeWizard[source]

Bases: pyworkflow.wizard.Wizard

classmethod show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.ImportOriginVolumeWizard[source]

Bases: pyworkflow.wizard.Wizard

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.PythonFormulaeWizard[source]

Bases: pyworkflow.wizard.Wizard

Assist in the creation of python formula to be evaluated. In Steps

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class pwem.wizards.wizards.PythonTopRankWizard[source]

Bases: pyworkflow.wizard.Wizard

Assist in the creation of python formula to be evaluated. In Steps

getInputAttributes(form)[source]
show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.