xmipp3.protocols.protocol_particle_pick_automatic module

class xmipp3.protocols.protocol_particle_pick_automatic.XmippParticlePickingAutomatic(**kwargs)

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto, xmipp3.base.XmippProtocol

Protocol to pick particles automatically in a set of micrographs using previous training

copyInputFilesStep()

filesToCopy = ['model_training.txt', 'model_svm.txt', 'model_pca_model.stk', 'model_rotpca_model.stk', 'model_particle_avg.xmp', 'config.xmd', 'templates.stk']

getCoordsDir()

getInputMicrographs()

Return the input micrographs that can be the same of the supervised picking or other ones selected by the user. (This can be used to pick a new set of micrographs with the same properties than a previous trained ones. )

getInputMicrographsPointer()

getMethods(output)

getSummary(coordSet)

readCoordsFromMics(workingDir, micList, coordSet)

This method should be implemented in subclasses to read the coordinates from a given list of micrographs.

readSetOfCoordinates(workingDir, coordSet)