xmipp3.protocols.protocol_classify_pca_streaming module

class xmipp3.protocols.protocol_classify_pca_streaming.XmippProtClassifyPcaStreaming(**args)[source]

Bases: ProtStreamingBase, XmippProtClassifyPca

Performs a 2D classification of particles using PCA. This method is optimized to run in streaming, enabling efficient processing of large datasets.

CREATE_CLASSES = 0

UPDATE_CLASSES = 1

classification(inputIm, numClass, stfile, mask, sigma)[source]

closeOutputStep()[source]

convertInputStep(input, outputOrig, outputMRC)[source]

getGpusList(separator)[source]

pcaTraining(inputIm, resolutionTrain, numTrain)[source]

runClassificationSteps(newParticlesSet)[source]

runPCASteps(newParticlesSet)[source]

setGPU(oneGPU=False)[source]

stepsGeneratorStep() → None[source]: This step should be implemented by any streaming protocol. It should check its input and when ready conditions are met call the self._insertFunctionStep method.

updateOutputSetOfClasses(lastCreationTime, streamMode)[source]

xmipp3.protocols.protocol_classify_pca_streaming.updateFileName(filepath, round)[source]