pyworkflow.config module

class pyworkflow.config.Config

Bases: object

Main Config for pyworkflow. It contains the main configuration values providing default values or, if present, taking them from the environment. It has SCIPION_HOME, SCIPION_USER_DATA … Necessary value is SCIPION_HOME and has to be present in the environment

class Root(root)

Bases: object

Simple helper to return path from a root.

join(*path)

SCIPION_CANCEL_FASTCOPY = None

SCIPION_CONFIG = 'scipion.conf'

SCIPION_CWD = '/home/buildbot/buildbot-worker/devel/docs'

SCIPION_DOMAIN = None

SCIPION_FONT_NAME = 'Helvetica'

SCIPION_FONT_SIZE = 10

SCIPION_GUI_REFRESH_IN_THREAD = 'False'

SCIPION_HOME = '/home/buildbot/devel/scipion'

SCIPION_HOSTS = 'hosts.conf'

SCIPION_LOCAL_CONFIG = '/home/buildbot/.config/scipion/scipion_devel.conf'

SCIPION_LOG = '/home/buildbot/ScipionUserData/logs/scipion.log'

SCIPION_LOGO = 'scipion_logo.gif'

SCIPION_LOGS = '/home/buildbot/ScipionUserData/logs'

SCIPION_LOG_CONFIG = None

SCIPION_LOG_LEVEL = 'INFO'

SCIPION_NOTES_ARGS = None

SCIPION_NOTES_FILE = 'notes.txt'

SCIPION_NOTES_PROGRAM = None

SCIPION_NOTIFY = 'True'

SCIPION_PLUGIN_JSON = 'plugins.json'

SCIPION_PLUGIN_REPO_URL = 'http://scipion.i2pc.es/getplugins/'

SCIPION_PRIORITY_PACKAGE_LIST = None

SCIPION_PROTOCOLS = 'protocols.conf'

SCIPION_SCRATCH = None

SCIPION_SOFTWARE = '/home/buildbot/devel/scipion/software'

SCIPION_STEPS_CHECK_SEC = 3

SCIPION_SUPPORT_EMAIL = 'scipion@cnb.csic.es'

SCIPION_TESTS = '/home/buildbot/devel/scipion/data/tests'

SCIPION_TESTS_CMD = '/home/buildbot/devel/scipion/scipion-pyworkflow/pyworkflow/apps/pw_run_tests.py'

SCIPION_TESTS_OUTPUT = '/home/buildbot/ScipionUserData/Tests'

SCIPION_TMP = '/home/buildbot/ScipionUserData/tmp'

SCIPION_URL = 'http://scipion.cnb.csic.es/downloads/scipion'

SCIPION_URL_SOFTWARE = 'http://scipion.cnb.csic.es/downloads/scipion/software'

SCIPION_URL_TESTDATA = 'http://scipion.cnb.csic.es/downloads/scipion/data/tests'

SCIPION_USER_DATA = '/home/buildbot/ScipionUserData'

VIEWERS = {}

WIZARD_MASK_COLOR = '[0.125, 0.909, 0.972]'

static debugOn(*args)

static debugSQLOn()

classmethod getBindingsFolder()

Folder where bindings must be placed. This folder is added to sys.path at launching time. If the binding depends on a dynamic libraries, those must be placed at cls.getLibFolder() :return: The bindings folder

classmethod getDomain()

Import domain module from path or name defined in SCIPION_DOMAIN.

classmethod getExternalJsonTemplates()

classmethod getLibFolder()

Returns:Folder where libraries must be placed in case a binding needs them

classmethod getLogsFolder()

Folder where scipion logs must be placed. The folder is created

classmethod getPriorityPackageList()

static getPythonLibFolder()

classmethod getStepsCheckSeconds()

classmethod getVars()

Return a dictionary with all variables defined in this Config.

classmethod getWizardMaskColor()

classmethod printVars()

Print the variables dict, mostly for debugging.

classmethod refreshInThreads()

classmethod setDomain(moduleOrNameOrPath)

static toggleDebug()

static toggleDebugSQL()

pyworkflow.config.findResource(filename)

pyworkflow.config.genNotesHeading()

pyworkflow.config.getAppsPath(*paths)

pyworkflow.config.getModuleFolder(moduleName)

Returns the path of a module without importing it

pyworkflow.config.getPwProtMpiRunScript()

pyworkflow.config.getPyworkflowPath()

Returns the path where pyworkflow is

pyworkflow.config.getScheduleScript()

pyworkflow.config.getSyncDataScript()

pyworkflow.config.getTestsScript()

pyworkflow.config.getViewerScript()

pyworkflow.config.join(*paths)

join paths from HOME .