pwem package¶
Subpackages¶
- pwem.convert package
- pwem.emlib package
- pwem.objects package
- pwem.protocols package
- Subpackages
- pwem.protocols.protocol_export package
- pwem.protocols.protocol_import package
- Submodules
- pwem.protocols.protocol_import.base module
- pwem.protocols.protocol_import.coordinates module
- pwem.protocols.protocol_import.ctfs module
- pwem.protocols.protocol_import.dataimport module
- pwem.protocols.protocol_import.images module
- pwem.protocols.protocol_import.masks module
- pwem.protocols.protocol_import.micrographs module
- pwem.protocols.protocol_import.particles module
- pwem.protocols.protocol_import.sequence module
- pwem.protocols.protocol_import.volumes module
- Module contents
- Submodules
- Submodules
- pwem.protocols.parallel module
- pwem.protocols.protocol module
- pwem.protocols.protocol_2d module
- pwem.protocols.protocol_3d module
- pwem.protocols.protocol_align_movies module
- pwem.protocols.protocol_alignment_assign module
- pwem.protocols.protocol_alignment_invertHand module
- pwem.protocols.protocol_batch module
- pwem.protocols.protocol_classes_consensus module
- pwem.protocols.protocol_create_stream_data module
- pwem.protocols.protocol_ctf_assign module
- pwem.protocols.protocol_extract_coordinates module
- pwem.protocols.protocol_metadata_editor module
- pwem.protocols.protocol_micrographs module
- pwem.protocols.protocol_movies module
- pwem.protocols.protocol_origin_sampling_volume module
- pwem.protocols.protocol_particles module
- pwem.protocols.protocol_particles_picking module
- pwem.protocols.protocol_pdf_report module
- pwem.protocols.protocol_sets module
- pwem.protocols.protocol_tests module
- pwem.protocols.protocol_tiltpairs module
- Module contents
- Subpackages
- pwem.viewers package
- Submodules
- pwem.viewers.filehandlers module
- pwem.viewers.plotter module
- pwem.viewers.showj module
- pwem.viewers.viewer_base module
- pwem.viewers.viewer_chimera module
- pwem.viewers.viewer_fsc module
- pwem.viewers.viewer_localres module
- pwem.viewers.viewer_pdf module
- pwem.viewers.viewer_sequence module
- pwem.viewers.viewer_vmd module
- pwem.viewers.viewer_volumes module
- pwem.viewers.viewers_data module
- pwem.viewers.viewers_protocols module
- pwem.viewers.views module
- Module contents
- Submodules
- pwem.wizards package
Module contents¶
This modules contains classes related with EM
-
class
pwem.
Config
[source]¶ Bases:
pyworkflow.config.Config
-
CHIMERA_HOME
= '/home/buildbot/devel/scipion/software/em/chimerax-1.1'¶
-
CUDA_BIN
= '/usr/local/cuda/bin'¶
-
CUDA_LIB
= '/usr/local/cuda/lib64'¶
-
EM_ROOT
= '/home/buildbot/devel/scipion/software/em'¶
-
JAVA_HOME
= ''¶
-
JAVA_MAX_MEMORY
= '2'¶
-
MPI_BINDIR
= '/usr/lib64/mpi/gcc/openmpi/bin'¶
-
MPI_LIBDIR
= '/usr/lib64/mpi/gcc/openmpi/lib'¶
-
XMIPP_HOME
= '/home/buildbot/devel/scipion/software/em/xmipp'¶
-
-
class
pwem.
Domain
[source]¶ Bases:
pyworkflow.plugin.Domain