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API Documentation

  • Scipion API
  • Plugins API
    • xmipp3 package
      • xmipp3.convert package
      • xmipp3.protocols package
        • xmipp3.protocols.protocol_preprocess package
        • xmipp3.protocols.protocol_projmatch package
        • xmipp3.protocols.protocol_align_volume module
        • xmipp3.protocols.protocol_align_volume_and_particles module
        • xmipp3.protocols.protocol_analyze_local_ctf module
        • xmipp3.protocols.protocol_angular_graph_consistency module
        • xmipp3.protocols.protocol_angular_resolution_alignment module
        • xmipp3.protocols.protocol_apply_alignment module
        • xmipp3.protocols.protocol_apply_tilt_to_ctf module
        • xmipp3.protocols.protocol_apply_transformation_matrix module
        • xmipp3.protocols.protocol_apply_zernike3d module
        • xmipp3.protocols.protocol_assignment_tilt_pair module
        • xmipp3.protocols.protocol_break_symmetry module
        • xmipp3.protocols.protocol_center_particles module
        • xmipp3.protocols.protocol_cl2d module
        • xmipp3.protocols.protocol_cl2d_align module
        • xmipp3.protocols.protocol_classes_2d_mapping module
        • xmipp3.protocols.protocol_classify_pca module
        • xmipp3.protocols.protocol_classify_pca_streaming module
        • xmipp3.protocols.protocol_compare_angles module
        • xmipp3.protocols.protocol_compare_reprojections module
        • xmipp3.protocols.protocol_consensus_classes module
        • xmipp3.protocols.protocol_consensus_local_ctf module
        • xmipp3.protocols.protocol_convert_pdb module
        • xmipp3.protocols.protocol_core_analysis module
        • xmipp3.protocols.protocol_create_gallery module
        • xmipp3.protocols.protocol_ctf_consensus module
        • xmipp3.protocols.protocol_ctf_correct_wiener2d module
        • xmipp3.protocols.protocol_ctf_defocus_group module
        • xmipp3.protocols.protocol_ctf_micrographs module
        • xmipp3.protocols.protocol_deep_center module
        • xmipp3.protocols.protocol_deep_hand module
        • xmipp3.protocols.protocol_deep_micrograph_screen module
        • xmipp3.protocols.protocol_denoise_particles module
        • xmipp3.protocols.protocol_eliminate_empty_images module
        • xmipp3.protocols.protocol_enrich module
        • xmipp3.protocols.protocol_extract_asymmetric_unit module
        • xmipp3.protocols.protocol_extract_particles module
        • xmipp3.protocols.protocol_extract_particles_movies module
        • xmipp3.protocols.protocol_extract_particles_pairs module
        • xmipp3.protocols.protocol_flexalign module
        • xmipp3.protocols.protocol_generate_reprojections module
        • xmipp3.protocols.protocol_helical_parameters module
        • xmipp3.protocols.protocol_kerdensom module
        • xmipp3.protocols.protocol_local_ctf module
        • xmipp3.protocols.protocol_ml2d module
        • xmipp3.protocols.protocol_movie_alignment_consensus module
        • xmipp3.protocols.protocol_movie_dose_analysis module
        • xmipp3.protocols.protocol_movie_gain module
        • xmipp3.protocols.protocol_movie_max_shift module
        • xmipp3.protocols.protocol_movie_opticalflow module
        • xmipp3.protocols.protocol_movie_split_frames module
        • xmipp3.protocols.protocol_multiple_fscs module
        • xmipp3.protocols.protocol_multireference_alignability module
        • xmipp3.protocols.protocol_normalize_strain module
        • xmipp3.protocols.protocol_particle_pick module
        • xmipp3.protocols.protocol_particle_pick_automatic module
        • xmipp3.protocols.protocol_particle_pick_consensus module
        • xmipp3.protocols.protocol_particle_pick_pairs module
        • xmipp3.protocols.protocol_particle_pick_remove_duplicates module
        • xmipp3.protocols.protocol_phantom_create module
        • xmipp3.protocols.protocol_pick_noise module
        • xmipp3.protocols.protocol_postProcessing_deepPostProcessing module
        • xmipp3.protocols.protocol_preprocess_micrographs module
        • xmipp3.protocols.protocol_random_conical_tilt module
        • xmipp3.protocols.protocol_ransac module
        • xmipp3.protocols.protocol_reconstruct_fourier module
        • xmipp3.protocols.protocol_reconstruct_highres module
        • xmipp3.protocols.protocol_reconstruct_significant module
        • xmipp3.protocols.protocol_reconstruct_swarm module
        • xmipp3.protocols.protocol_resolution3d module
        • xmipp3.protocols.protocol_resolution_bfactor module
        • xmipp3.protocols.protocol_resolution_deepres module
        • xmipp3.protocols.protocol_resolution_directional module
        • xmipp3.protocols.protocol_resolution_fso module
        • xmipp3.protocols.protocol_resolution_monogenic_signal module
        • xmipp3.protocols.protocol_rotate_volume module
        • xmipp3.protocols.protocol_rotational_symmetry module
        • xmipp3.protocols.protocol_screen_deepConsensus module
        • xmipp3.protocols.protocol_screen_deeplearning module
        • xmipp3.protocols.protocol_screen_particles module
        • xmipp3.protocols.protocol_shift_particles module
        • xmipp3.protocols.protocol_shift_volume module
        • xmipp3.protocols.protocol_simulate_ctf module
        • xmipp3.protocols.protocol_structure_map module
        • xmipp3.protocols.protocol_structure_map_zernike3d module
        • xmipp3.protocols.protocol_subtract_projection module
        • xmipp3.protocols.protocol_tilt_analysis module
        • xmipp3.protocols.protocol_trigger_data module
        • xmipp3.protocols.protocol_validate_fscq module
        • xmipp3.protocols.protocol_validate_nontilt module
        • xmipp3.protocols.protocol_validate_overfitting module
        • xmipp3.protocols.protocol_volume_adjust_sub module
        • xmipp3.protocols.protocol_volume_consensus module
        • xmipp3.protocols.protocol_volume_deform_zernike3d module
        • xmipp3.protocols.protocol_volume_local_adjust module
        • xmipp3.protocols.protocol_volume_local_sharpening module
        • xmipp3.protocols.protocol_volume_strain module
        • xmipp3.protocols.protocol_write_testC module
        • xmipp3.protocols.protocol_write_testP module
      • xmipp3.viewers package
      • xmipp3.base module
      • xmipp3.bibtex module
      • xmipp3.constants module
      • xmipp3.programs module
      • xmipp3.utils module
      • xmipp3.wizards module
  • Xmipp API

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  • xmipp3.protocols.protocol_preprocess package
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xmipp3.protocols.protocol_preprocess package

Submodules

  • xmipp3.protocols.protocol_preprocess.geometrical_mask module
  • xmipp3.protocols.protocol_preprocess.protocol_add_noise module
  • xmipp3.protocols.protocol_preprocess.protocol_create_mask2d module
  • xmipp3.protocols.protocol_preprocess.protocol_create_mask3d module
  • xmipp3.protocols.protocol_preprocess.protocol_crop_resize module
  • xmipp3.protocols.protocol_preprocess.protocol_filter module
  • xmipp3.protocols.protocol_preprocess.protocol_image_operate module
  • xmipp3.protocols.protocol_preprocess.protocol_mask module
  • xmipp3.protocols.protocol_preprocess.protocol_movie_resize module
  • xmipp3.protocols.protocol_preprocess.protocol_preprocess module
  • xmipp3.protocols.protocol_preprocess.protocol_process module

Module contents

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