xmipp3.protocols.protocol_multireference_alignability module

class xmipp3.protocols.protocol_multireference_alignability.XmippProtMultiRefAlignability(*args, **kwargs)

Bases: ProtAnalysis3D

Performs soft alignment validation of a set of particles confronting them against a given 3DEM map. This protocol produces particle alignment precision and accuracy parameters.

INPUTARG = '-i %s'

OUTPUTARG = ' -o %s'

alignabilityStep(volName, volDir, sym)

angularAccuracyStep(volName, volDir, indx)

convertInputStep(particlesId)

Write the input images as a Xmipp metadata file. particlesId: is only need to detect changes in input particles and cause restart from here.

createOutputStep()

createPlot2D(volPrefix, md)

neighbourhoodDirectionStep(volName, volDir, sym)

phantomProject()

projectionLibraryStep(volDir, angularSampling)

significantStep(volName, volDir, anglesPath, params)