Scipion
Set up
Installing Scipion
Scipion configuration
Host configuration
Troubleshooting
User documentation
Graphical interface manuals
Image processing resources
Tutorials
Processing How To’s
Facilities
On-the-fly processing
Streaming workflows
Summary Reports
Developer documentation
Developers Page
API Documentation
Scipion API
Plugins API
xmipp3 package
xmipp3.convert package
xmipp3.legacy package
xmipp3.protocols package
xmipp3.protocols.protocol_preprocess package
xmipp3.protocols.protocol_projmatch package
xmipp3.protocols.protocol_align_volume module
xmipp3.protocols.protocol_align_volume_and_particles module
xmipp3.protocols.protocol_analyze_local_ctf module
xmipp3.protocols.protocol_angular_graph_consistency module
xmipp3.protocols.protocol_apply_alignment module
xmipp3.protocols.protocol_apply_tilt_to_ctf module
xmipp3.protocols.protocol_apply_transformation_matrix module
xmipp3.protocols.protocol_apply_zernike3d module
xmipp3.protocols.protocol_assignment_tilt_pair module
xmipp3.protocols.protocol_break_symmetry module
xmipp3.protocols.protocol_center_particles module
xmipp3.protocols.protocol_cl2d module
xmipp3.protocols.protocol_cl2d_align module
xmipp3.protocols.protocol_cl2d_clustering module
xmipp3.protocols.protocol_classes_2d_mapping module
xmipp3.protocols.protocol_classify_pca module
xmipp3.protocols.protocol_classify_pca_streaming module
xmipp3.protocols.protocol_compare_angles module
xmipp3.protocols.protocol_compare_reprojections module
xmipp3.protocols.protocol_compute_likelihood module
xmipp3.protocols.protocol_consensus_classes module
xmipp3.protocols.protocol_consensus_local_ctf module
xmipp3.protocols.protocol_convert_pdb module
xmipp3.protocols.protocol_core_analysis module
xmipp3.protocols.protocol_create_gallery module
xmipp3.protocols.protocol_ctf_consensus module
xmipp3.protocols.protocol_ctf_correct_phase module
xmipp3.protocols.protocol_ctf_correct_wiener2d module
xmipp3.protocols.protocol_ctf_defocus_group module
xmipp3.protocols.protocol_ctf_micrographs module
xmipp3.protocols.protocol_deep_center module
xmipp3.protocols.protocol_deep_center_predict module
xmipp3.protocols.protocol_deep_hand module
xmipp3.protocols.protocol_deep_micrograph_screen module
xmipp3.protocols.protocol_denoise_particles module
xmipp3.protocols.protocol_eliminate_empty_images module
xmipp3.protocols.protocol_extract_asymmetric_unit module
xmipp3.protocols.protocol_extract_particles module
xmipp3.protocols.protocol_extract_particles_pairs module
xmipp3.protocols.protocol_flexalign module
xmipp3.protocols.protocol_generate_reprojections module
xmipp3.protocols.protocol_helical_parameters module
xmipp3.protocols.protocol_kerdensom module
xmipp3.protocols.protocol_local_ctf module
xmipp3.protocols.protocol_mics_defocus_balancer module
xmipp3.protocols.protocol_ml2d module
xmipp3.protocols.protocol_movie_alignment_consensus module
xmipp3.protocols.protocol_movie_dose_analysis module
xmipp3.protocols.protocol_movie_gain module
xmipp3.protocols.protocol_movie_max_shift module
xmipp3.protocols.protocol_movie_split_frames module
xmipp3.protocols.protocol_multiple_fscs module
xmipp3.protocols.protocol_multireference_alignability module
xmipp3.protocols.protocol_normalize_strain module
xmipp3.protocols.protocol_particle_pick module
xmipp3.protocols.protocol_particle_pick_automatic module
xmipp3.protocols.protocol_particle_pick_consensus module
xmipp3.protocols.protocol_particle_pick_pairs module
xmipp3.protocols.protocol_particle_pick_remove_duplicates module
xmipp3.protocols.protocol_phantom_create module
xmipp3.protocols.protocol_pick_noise module
xmipp3.protocols.protocol_postProcessing_deepPostProcessing module
xmipp3.protocols.protocol_preprocess_micrographs module
xmipp3.protocols.protocol_random_conical_tilt module
xmipp3.protocols.protocol_ransac module
xmipp3.protocols.protocol_reconstruct_fourier module
xmipp3.protocols.protocol_reconstruct_highres module
xmipp3.protocols.protocol_reconstruct_significant module
xmipp3.protocols.protocol_reconstruct_swarm module
xmipp3.protocols.protocol_resolution3d module
xmipp3.protocols.protocol_resolution_bfactor module
xmipp3.protocols.protocol_resolution_deepres module
xmipp3.protocols.protocol_resolution_directional module
xmipp3.protocols.protocol_resolution_fso module
xmipp3.protocols.protocol_resolution_monogenic_signal module
xmipp3.protocols.protocol_rotate_volume module
xmipp3.protocols.protocol_rotational_symmetry module
xmipp3.protocols.protocol_screen_deepConsensus module
xmipp3.protocols.protocol_screen_particles module
xmipp3.protocols.protocol_shift_particles module
xmipp3.protocols.protocol_shift_volume module
xmipp3.protocols.protocol_simulate_ctf module
xmipp3.protocols.protocol_structure_map module
xmipp3.protocols.protocol_structure_map_zernike3d module
xmipp3.protocols.protocol_subtract_projection module
xmipp3.protocols.protocol_tilt_analysis module
xmipp3.protocols.protocol_trigger_data module
xmipp3.protocols.protocol_validate_fscq module
xmipp3.protocols.protocol_validate_nontilt module
xmipp3.protocols.protocol_validate_overfitting module
xmipp3.protocols.protocol_volume_adjust_sub module
xmipp3.protocols.protocol_volume_consensus module
xmipp3.protocols.protocol_volume_deform_zernike3d module
xmipp3.protocols.protocol_volume_local_adjust module
xmipp3.protocols.protocol_volume_local_sharpening module
xmipp3.protocols.protocol_volume_strain module
xmipp3.protocols.protocol_write_testC module
xmipp3.protocols.protocol_write_testP module
xmipp3.viewers package
xmipp3.base module
xmipp3.bibtex module
xmipp3.checkProtocolsConf module
xmipp3.constants module
xmipp3.logParser module
xmipp3.programs module
xmipp3.protocolsCollectInfo module
xmipp3.utils module
xmipp3.version module
xmipp3.wizards module
Xmipp API
Get in touch
Contact Us
Licences
Licenses
Scipion
»
Plugins API
»
xmipp3 package
»
xmipp3.protocols package
»
xmipp3.protocols.protocol_align_volume module
View page source
xmipp3.protocols.protocol_align_volume module