pwem.protocols.protocol_export.protocol_export_DB module
- class pwem.protocols.protocol_export.protocol_export_DB.ProtExportDataBases(**kwargs)[source]
Bases:
EMProtocol
generates files for elements to submit structures to EMDB/PDB. Since mmcif/pdb is only partially supported by some software the protocol creates 4 versions of the atomic struct file with the hope that at least one of them will work.
- ADDITIONALVOLUMEDIR = 'addMaps'
- ADDITIONALVOLUMENAME = 'map_%02d.mrc'
- COORDINATEFILENAME = 'coordinates.cif'
- HALFVOLUMENAME = 'half_map_%d.mrc'
- MASKDIR = 'masks'
- MASKNAME = 'mask_%02d.mrc'
- SYMPLIFIED_STRUCT = 'symplified_atom_structure.cif'
- VOLUMENAME = 'main_map.mrc'