xmipp3.protocols.protocol_structure_map module

class xmipp3.protocols.protocol_structure_map.XmippProtStructureMap(**args)[source]

Bases: ProtAnalysis3D

Performs structure mapping based on correlation distance between volumes. This protocol helps identify similarities and differences among multiple structures by quantifying their spatial relationships.

OUTPUT_SUFFIX = '_%d_crop.vol'

alignStep(inputVolFn, refVolFn, i, j)[source]

cleanIntermediate()[source]

computeCorr(vol1, vol2, i, j)[source]

convertStep(volFn, volDim, volSr, minDim, maxSr, nVoli)[source]

correlationMatrix(volList)[source]

gatherResultsStepCorr()[source]

saveCorrelation(matrix, fnRoot, label='')[source]

split(array, nrows, ncols)[source]: Split a matrix into sub-matrices.