xmipp3.protocols.protocol_resolution_bfactor module

class xmipp3.protocols.protocol_resolution_bfactor.XmippProtbfactorResolution(**args)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Given a local resolution map and an atomic model, this protocols provides the matching between the local resolution with the local bfactor per residue.

convertInputStep()[source]

Read the input volume and check the file extension to convert to mrc is it is the case.

matchingBfactorLocalResolution()[source]

The local resolution map and the pdb are taken and analyzed to match the local resolution and bfactor per residue. The output will be a pdb file with the bfactor column substituted by the normalized local resolution. This is the (local resolution - fscResolution)/fscResolution.

mrc_convert(fileName, outputFileName)[source]

Check if the extension is .mrc, if not then uses xmipp to convert it