pwem.protocols.protocol_movies module

class pwem.protocols.protocol_movies.ProtExtractMovieParticles(**kwargs)

Bases: pwem.protocols.protocol_particles.ProtExtractParticles, pwem.protocols.protocol_movies.ProtProcessMovies

Extract a set of Particles from each frame of a set of Movies.

class pwem.protocols.protocol_movies.ProtMovieAssignGain(**kwargs)

Bases: pwem.protocols.protocol_micrographs.ProtPreprocessMicrographs

Assign a gain image to a set of movies

createOutputStep()

class pwem.protocols.protocol_movies.ProtProcessMovies(**kwargs)

Bases: pwem.protocols.protocol_micrographs.ProtPreprocessMicrographs

Protocol base for processing movies from direct detectors cameras. This base class will iterate through the movies (extract them if compressed) and call a _processMovie method for each one.

CONVERT_TO_MRC = None

CORRECT_GAIN = False

convertInputStep()

Should be implemented in sub-classes if needed.

getFinalCorrectionImagePath(correctionImage)

Returns the final path to the correction image (converted or not) or and exception correctionImage does not exists

getGainAndDark()

processMovieStep(movieDict, hasAlignment)