xmipp3.protocols.protocol_preprocess.protocol_crop_resize module

class xmipp3.protocols.protocol_preprocess.protocol_crop_resize.XmippProtCropResizeParticles(**kwargs)

Bases: XmippProcessParticles

Crop or resize a set of particles

OUTPUT_MASK_NAME = 'outputMask'

OUTPUT_PARTICLES_NAME = 'outputParticles'

convertInputStep()

convert if necessary

createOutputStep()

filterStep(isFirstStep, args)

isMask()

This function returns True if the input object is a Mask. False otherwise.

resizeStep(isFirstStep, args)

windowStep(isFirstStep, args)

class xmipp3.protocols.protocol_preprocess.protocol_crop_resize.XmippProtCropResizeVolumes(**kwargs)

Bases: XmippProcessVolumes

Crops or resizes 3D volumes to a desired size or region of interest. This protocol helps optimize memory usage and focus on relevant structural areas for analysis or comparison.

filterStep(isFirstStep, args)

resizeStep(isFirstStep, args)

windowStep(isFirstStep, args)

class xmipp3.protocols.protocol_preprocess.protocol_crop_resize.XmippResizeHelper

Bases: object

Common features to change dimensions of either SetOfParticles, Volume or SetOfVolumes objects.

RESIZE_DIMENSIONS = 1

RESIZE_FACTOR = 2

RESIZE_PYRAMID = 3

RESIZE_SAMPLINGRATE = 0

WINDOW_OP_CROP = 0

WINDOW_OP_WINDOW = 1

classmethod filterStep(protocol, args)

classmethod resizeStep(protocol, args)

classmethod windowStep(protocol, args)