pyworkflow.plugin module

class pyworkflow.plugin.Domain

Bases: object

Class to represent the application domain. It will allow to specify new objects, protocols, viewers and wizards through the registration of new plugins.

classmethod findClass(className)

Find a class object given its name. The search will start with protocols and then with protocols.

classmethod findSubClasses(classDict, className)

Find all subclasses of a give className.

classmethod findViewers(className, environment)

Find the available viewers in this Domain for this class.

classmethod findWizards(protocol, environment)

Find available wizards for this class, in this Domain. Params:

protocols: Protocol instance for which wizards will be search. environment: The environment name for wizards (e.g TKINTER)

Returns:

a dict with the paramName and wizards for this class.

classmethod getMapperDict()

Return a dictionary that can be used with subclasses of Mapper to store/retrieve objects (including protocols) defined in this Domain.

classmethod getModuleClasses(module)

classmethod getName()

Return the name of this Domain.

classmethod getObjects()

Return all EMObject subclasses from all plugins for this domain.

classmethod getPlugin(name)

Load a given plugin name.

classmethod getPlugins()

Return existing plugins for this Domain.

classmethod getPreferredViewers(className)

Find and import the preferred viewers for this class.

classmethod getProtocols()

Return all Protocol subclasses from all plugins for this domain.

classmethod getViewers()

Return all Viewer subclasses from all plugins for this domain.

classmethod getWizards()

Return all Wizard subclasses from all plugins for this domain.

static importFromPlugin(module, objects=None, errorMsg='', doRaise=False)

This method try to import either a list of objects from the

module/plugin or the whole module/plugin and returns what is imported if not fails. When the import fails (due to the plugin or the object is not found), it prints a common message + optional errorMsg; or it raise an error with the same message, if doRaise is True.

-> Usages:

# Import the whole plugin ‘plugin1’ as ‘plug1’ plug1 = importFromPlugin(‘plugin1’)

# Import a plugin’s module pl1Cons = importFromPlugin(‘plug1.constants’)

# Import a single class from a plugin’s module p1prot1 = importFromPlugin(‘plug1.protocols’, ‘prot1’)

# Import some classes from a plugin’s module, # the returned tuple has the same length of the second argument pt1, pt2, … = importFromPlugin(‘plugin1.protocols’,

[‘pt1’, ‘pt2’, …])

classmethod printInfo()

Simple function (mainly for debugging) that prints basic information about this Domain.

classmethod refreshPlugin(name)

Refresh a given plugin name.

classmethod registerPlugin(name)

Register a new plugin. This function should only be called when creating a class with __metaclass__=PluginMeta that will trigger this.

class pyworkflow.plugin.Plugin

Bases: object

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getActiveVersion(home=None, versions=None)

Return the version of the binaries that are currently active. In the current implementation it will be inferred from the *_HOME variable, so it should contain the version number in it.

classmethod getCondaActivationCmd()

classmethod getEnviron()

Setup the environment variables needed to launch programs.

classmethod getHome(*paths)

Return a path from the “home” of the package if the _homeVar is defined in the plugin.

classmethod getName()

classmethod getPluginTemplateDir()

classmethod getSupportedVersions()

Return the list of supported binary versions.

classmethod getTemplates()

Get the plugin templates from the templates directory. If more than one template is found or passed, a dialog is raised to choose one.

classmethod getUrl(protClass=None)

Url for the plugin to point users to it

classmethod getVar(varName, defaultValue=None)

Return the value of a given variable.

classmethod getVars()

Return the value of a given variable.

classmethod validateInstallation()

Check if the binaries are properly installed and if not, return a list with the error messages.

The default implementation will check if the _pathVars exists.

class pyworkflow.plugin.PluginInfo(name)

Bases: object

Information related to a given plugin when it is installed via PIP

getAuthor()

getAuthorEmail()

getHomePage()

getKeywords()