All modules for which code is available
- pwem
- pwem.convert.atom_struct
- pwem.convert.headers
- pwem.convert.sequence
- pwem.convert.symmetry
- pwem.convert.trigonometry
- pwem.convert.utils
- pwem.emlib.image.image_handler
- pwem.emlib.image.image_readers
- pwem.emlib.metadata.utils
- pwem.objects.data
- pwem.objects.data_flexhub
- pwem.objects.data_tiltpairs
- pwem.protocols.parallel
- pwem.protocols.protocol
- pwem.protocols.protocol_2d
- pwem.protocols.protocol_3d
- pwem.protocols.protocol_align_movies
- pwem.protocols.protocol_alignment_assign
- pwem.protocols.protocol_alignment_invertHand
- pwem.protocols.protocol_base_flexhub
- pwem.protocols.protocol_batch
- pwem.protocols.protocol_boxsize_checkpoint
- pwem.protocols.protocol_boxsize_parameters
- pwem.protocols.protocol_classes_selector
- pwem.protocols.protocol_create_stream_data
- pwem.protocols.protocol_ctf_assign
- pwem.protocols.protocol_export.protocol_export_DB
- pwem.protocols.protocol_extract_coordinates
- pwem.protocols.protocol_import.base
- pwem.protocols.protocol_import.coordinates
- pwem.protocols.protocol_import.ctfs
- pwem.protocols.protocol_import.dataimport
- pwem.protocols.protocol_import.images
- pwem.protocols.protocol_import.masks
- pwem.protocols.protocol_import.micrographs
- pwem.protocols.protocol_import.particles
- pwem.protocols.protocol_import.sequence
- pwem.protocols.protocol_import.volumes
- pwem.protocols.protocol_mathematical_operator
- pwem.protocols.protocol_micrographs
- pwem.protocols.protocol_movie_eraser
- pwem.protocols.protocol_movies
- pwem.protocols.protocol_origin_sampling_volume
- pwem.protocols.protocol_particles
- pwem.protocols.protocol_particles_picking
- pwem.protocols.protocol_pdf_report
- pwem.protocols.protocol_projection_edit
- pwem.protocols.protocol_set_editor
- pwem.protocols.protocol_set_filter
- pwem.protocols.protocol_sets
- pwem.protocols.protocol_tests
- pwem.protocols.protocol_tiltpairs
- pwem.protocols.protocol_tools
- pwem.protocols.protocol_wait
- pwem.utils
- pwem.viewers.filehandlers
- pwem.viewers.plotter
- pwem.viewers.showj
- pwem.viewers.viewer_angular_dist
- pwem.viewers.viewer_base
- pwem.viewers.viewer_chimera
- pwem.viewers.viewer_coordinates
- pwem.viewers.viewer_fsc
- pwem.viewers.viewer_localres
- pwem.viewers.viewer_pdf
- pwem.viewers.viewer_sequence
- pwem.viewers.viewer_vmd
- pwem.viewers.viewer_volumes
- pwem.viewers.viewers_data
- pwem.viewers.views
- pwem.wizards.wizard
- pwem.wizards.wizards
- pwem.wizards.wizards_3d.callbacks
- pwem.wizards.wizards_3d.mask_structure_wizard
- pwem.wizards.wizards_3d.mask_volume_wizard
- pyworkflow.apps.pw_plot
- pyworkflow.apps.pw_project
- pyworkflow.apps.pw_protocol_list
- pyworkflow.apps.pw_run_tests
- pyworkflow.apps.pw_schedule_run
- pyworkflow.apps.pw_sync_data
- pyworkflow.apps.pw_viewer
- pyworkflow.config
- pyworkflow.constants
- pyworkflow.exceptions
- pyworkflow.gui.browser
- pyworkflow.gui.canvas
- pyworkflow.gui.dialog
- pyworkflow.gui.form
- pyworkflow.gui.graph
- pyworkflow.gui.graph_layout
- pyworkflow.gui.gui
- pyworkflow.gui.matplotlib_image
- pyworkflow.gui.plotter
- pyworkflow.gui.project.base
- pyworkflow.gui.project.labels
- pyworkflow.gui.project.project
- pyworkflow.gui.project.searchprotocol
- pyworkflow.gui.project.searchrun
- pyworkflow.gui.project.steps
- pyworkflow.gui.project.utils
- pyworkflow.gui.project.variables
- pyworkflow.gui.project.viewdata
- pyworkflow.gui.project.viewprojects
- pyworkflow.gui.project.viewprotocols
- pyworkflow.gui.project.viewprotocols_extra
- pyworkflow.gui.text
- pyworkflow.gui.tooltip
- pyworkflow.gui.tree
- pyworkflow.gui.widgets
- pyworkflow.mapper.mapper
- pyworkflow.mapper.sqlite
- pyworkflow.mapper.sqlite_db
- pyworkflow.object
- pyworkflow.plugin
- pyworkflow.project.config
- pyworkflow.project.manager
- pyworkflow.project.project
- pyworkflow.protocol.executor
- pyworkflow.protocol.hosts
- pyworkflow.protocol.launch
- pyworkflow.protocol.package
- pyworkflow.protocol.params
- pyworkflow.protocol.protocol
- pyworkflow.template
- pyworkflow.tests.test_utils
- pyworkflow.tests.tests
- pyworkflow.utils.dataset
- pyworkflow.utils.echo
- pyworkflow.utils.graph
- pyworkflow.utils.log
- pyworkflow.utils.path
- pyworkflow.utils.process
- pyworkflow.utils.profiler
- pyworkflow.utils.progressbar
- pyworkflow.utils.properties
- pyworkflow.utils.reflection
- pyworkflow.utils.utils
- pyworkflow.utils.which
- pyworkflow.viewer
- pyworkflow.webservices.notifier
- pyworkflow.webservices.repository
- pyworkflow.wizard
- scipion.guiplugin
- scipion.install.change_rpath
- scipion.install.clean
- scipion.install.find_deps
- scipion.install.funcs
- scipion.install.install_plugin
- scipion.install.plugin_funcs
- scipion.install.plugin_manager
- scipion.install.update_manager
- scipion.scripts.config
- scipion.scripts.fontbrowser
- scipion.scripts.kickoff
- scipion.scripts.tutorial
- scipion.utils
- xmipp3
- xmipp3.base
- xmipp3.convert.convert
- xmipp3.convert.dataimport
- xmipp3.convert.io_coordinates
- xmipp3.programs
- xmipp3.protocols.protocol_align_volume
- xmipp3.protocols.protocol_angular_graph_consistency
- xmipp3.protocols.protocol_angular_resolution_alignment
- xmipp3.protocols.protocol_apply_alignment
- xmipp3.protocols.protocol_apply_transformation_matrix
- xmipp3.protocols.protocol_assignment_tilt_pair
- xmipp3.protocols.protocol_break_symmetry
- xmipp3.protocols.protocol_cl2d
- xmipp3.protocols.protocol_cl2d_align
- xmipp3.protocols.protocol_classify_pca
- xmipp3.protocols.protocol_classify_pca_streaming
- xmipp3.protocols.protocol_compare_angles
- xmipp3.protocols.protocol_compare_reprojections
- xmipp3.protocols.protocol_convert_pdb
- xmipp3.protocols.protocol_core_analysis
- xmipp3.protocols.protocol_create_gallery
- xmipp3.protocols.protocol_ctf_consensus
- xmipp3.protocols.protocol_ctf_correct_wiener2d
- xmipp3.protocols.protocol_ctf_defocus_group
- xmipp3.protocols.protocol_ctf_micrographs
- xmipp3.protocols.protocol_particle_pick_pairs
- xmipp3.protocols.protocol_preprocess.geometrical_mask
- xmipp3.protocols.protocol_preprocess.protocol_add_noise
- xmipp3.protocols.protocol_preprocess.protocol_create_mask2d
- xmipp3.protocols.protocol_preprocess.protocol_create_mask3d
- xmipp3.protocols.protocol_preprocess.protocol_crop_resize
- xmipp3.protocols.protocol_preprocess.protocol_filter
- xmipp3.protocols.protocol_preprocess.protocol_image_operate
- xmipp3.protocols.protocol_preprocess.protocol_mask
- xmipp3.protocols.protocol_preprocess.protocol_movie_resize
- xmipp3.protocols.protocol_preprocess.protocol_preprocess
- xmipp3.protocols.protocol_preprocess.protocol_process
- xmipp3.utils