#!/usr/bin/env python
# **************************************************************************
# *
# * Authors: J.M. De la Rosa Trevin (jmdelarosa@cnb.csic.es)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 3 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
import os
import sys
from pwem.viewers import DataView
from pyworkflow import Config
from pyworkflow.gui.browser import FileBrowserWindow
[docs]def showDir(path):
window = FileBrowserWindow("Browsing: " + path, path=path)
window.show()
[docs]def showFile(path, viewParams):
DataView(path, viewParams).show()
if __name__ == '__main__':
if '-h' in sys.argv or '--help' in sys.argv:
print("usage: scipion3 view [file1 file2 file3 ... fileN]")
else:
if len(sys.argv) == 1: # no extra arguments, show current directory
showDir(os.getcwd())
else:
args = {'-i': []}
lastOpt = '-i'
for a in sys.argv[1:]:
if a.startswith('-'):
lastOpt = a
if lastOpt not in args:
args[lastOpt] = []
else:
args[lastOpt].append(a)
inputFiles = args['-i']
del args['-i']
viewParams = {}
for k, v in args.items():
viewParams[k.replace('-', '')] = ' '.join(v)
# Trigger plugin initialization
Config.getDomain().getPlugins()
for fn in inputFiles:
if os.path.isdir(fn):
showDir(fn)
else:
showFile(fn, viewParams)