# **************************************************************************
# *
# * Authors: Estrella Fernandez Gimenez
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
from pyworkflow.viewer import (ProtocolViewer, DESKTOP_TKINTER, WEB_DJANGO)
from pyworkflow.protocol.params import IntParam, LabelParam
from pwem.viewers import ObjectView, showj
from xmipp3.protocols.protocol_subtract_projection import XmippProtSubtractProjection
[docs]class XmippSubtractProjectionViewer(ProtocolViewer):
""" Visualization of the output of subtract projection protocol """
_label = 'viewer subtract projection'
_targets = [XmippProtSubtractProjection]
_environments = [DESKTOP_TKINTER, WEB_DJANGO]
def __init__(self, **kwargs):
ProtocolViewer.__init__(self, **kwargs)
self._data = None
[docs] def getData(self):
if self._data is None:
self._data = self.loadData()
return self._data
def _defineParams(self, form):
form.addSection(label='Visualization')
form.addParam('displayR2', LabelParam, default=False, label='Display subtracted particles')
def _getVisualizeDict(self):
return {'displayR2': self._viewR2}
def _viewR2(self, paramName=None):
views = []
if hasattr(self.protocol, "outputParticles"):
obj = self.protocol.outputParticles
fn = obj.getFileName()
labels = 'id enabled _index _filename _xmipp_R2subtraction'
views.append(ObjectView(self._project, obj.strId(), fn, viewParams={showj.ORDER: labels,
showj.VISIBLE: labels,
showj.RENDER: '_filename',
showj.MODE: showj.MODE_MD}))
return views