Source code for pyworkflow.apps.pw_run_tests

#!/usr/bin/env python
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# *
# * Authors:     J.M. De la Rosa Trevin (
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# * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
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# * the Free Software Foundation; either version 3 of the License, or
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Run or show the selected tests. Tests can be selected by giving
the "case", or by giving the paths and file pattern to use for
searching them.
from os.path import basename
import argparse
from collections import OrderedDict

import pyworkflow.tests as pwtests
from pyworkflow import getTestsScript, SCIPION_TESTS_CMD, Config

from pyworkflow.tests import *

TEST = 2

[docs]class Tester:
[docs] def main(self, args=None): print("Running tests....") # Trigger plugin's variable definition Config.getDomain().getPlugins() parser = argparse.ArgumentParser(prog=self.getTestsCommand(), description=__doc__) g = parser.add_mutually_exclusive_group() g.add_argument('--run', action='store_true', help='run the selected tests') g.add_argument('--show', action='store_true', help='show available tests', default=True) add = parser.add_argument # shortcut add('--pattern', default='test*.py', help='pattern for the files that will be used in the tests') add('--grep', default=None, nargs='+', help='only show/run tests containing the provided words') add('--skip', default=None, nargs='+', help='skip tests that contains these words') add('--log', default=None, nargs='?', help="Generate logs files with the output of each test.") add('--mode', default='classes', choices=['modules', 'classes', 'onlyclasses', 'all'], help='how much detail to give in show mode') add('tests', metavar='TEST', nargs='*', help='test case from string identifier (module, class or callable)') args = parser.parse_args(args) if not and not and not args.tests: sys.exit(parser.format_help()) testsDict = OrderedDict() testLoader = unittest.defaultTestLoader if args.tests: # In this case the tests are passed as argument. # The full name of the test will be used to load it. testsDict['tests'] = unittest.TestSuite() for t in args.tests: try: testsDict['tests'].addTests(testLoader.loadTestsFromName(t)) except Exception as e: print('Cannot load test %s -- skipping' % t) import traceback traceback.print_exc() else: # In this other case, we will load the test available # from pyworkflow and the other plugins # self.paths = [('pyworkflow', os.path.dirname(os.path.dirname(pw.__file__)))] self.paths = [] for name, plugin in pw.Config.getDomain().getPlugins().items(): self.paths.append((name, os.path.dirname(plugin.__path__[0]))) for k, p in self.paths: testPath = os.path.join(p, k, 'tests') if os.path.exists(testPath): testsDict[k] =, pattern=args.pattern, top_level_dir=p) self.grep = [g.lower() for g in args.grep] if args.grep else [] self.skip = args.skip self.mode = args.mode self.log = args.log if args.tests: self.runSingleTest(testsDict['tests']) elif for moduleName, tests in testsDict.items(): print(pwutils.cyan(">>>> %s" % moduleName)) self.runTests(moduleName, tests) elif args.grep: pattern = args.grep[0] for moduleName, tests in testsDict.items(): self.printTests(pattern, tests) else: for moduleName, tests in testsDict.items(): if self._match(moduleName): print(pwutils.cyan(">>>> %s" % moduleName)) self.printTests(moduleName, tests)
def _match(self, itemName): itemLower = itemName.lower() grep = (not self.grep or all(g.lower() in itemLower for g in self.grep)) skip = (self.skip and any(g.lower() in itemLower for g in self.skip)) return grep and not skip def __iterTests(self, test): """ Recursively iterate over a testsuite. """ print("__iterTests: %s, is-suite: %s" % (str(test.__class__), isinstance(test, unittest.TestSuite))) if isinstance(test, unittest.TestSuite): for t in test: self.__iterTests(t) else: yield test def _visitTests(self, moduleName, tests, newItemCallback): """ Show the list of tests available """ mode = self.mode assert mode in ['modules', 'classes', 'onlyclasses', 'all'], 'Unknown mode %s' % mode # First flatten the list of tests. # testsFlat = list(iter(self.__iterTests(tests))) testsFlat = [] toCheck = [t for t in tests] while toCheck: test = toCheck.pop() if isinstance(test, unittest.TestSuite): toCheck += [t for t in test] elif test not in testsFlat: testsFlat.append(test) # Follow the flattened list of tests and show the module, class # and name, in a nice way. lastClass = None lastModule = None if testsFlat: for t in testsFlat: testModuleName, className, testName ='.', 2) # If there is a failure loading the test, show it errorStr = 'unittest.loader._FailedTest.' if testModuleName.startswith(errorStr): newName =, '') if self._match(newName): print('Error loading the test. Please, run the test for more information:'), newName) continue if testModuleName != lastModule: lastModule = testModuleName if mode != 'onlyclasses': newItemCallback(MODULE, "%s" % testModuleName) if mode in ['classes', 'onlyclasses', 'all'] and className != lastClass: lastClass = className newItemCallback(CLASS, "%s.%s" % (testModuleName, className)) if mode == 'all': newItemCallback(TEST, "%s.%s.%s" % (testModuleName, className, testName)) else: if not self.grep: print(' The plugin does not have any test')) def _printNewItem(self, itemType, itemName): if self._match(itemName): spaces = (itemType * 2) * ' ' print("%s %s %s" % (spaces, self.getTestsCommand(), itemName))
[docs] def getTestsCommand(self): return os.environ.get(SCIPION_TESTS_CMD, getTestsScript())
[docs] def printTests(self, moduleName, tests): self._visitTests(moduleName, tests, self._printNewItem)
def _logTest(self, cmd, runTime, result, logFile): with open(self.testLog, "r+") as f: lines = f.readlines() for l in lines: if '<!-- LAST_ROW -->' in l: rowStr = "<tr><td>%s</td><td>%s</td><td>%s</td><td>%s</td><td>%s</td></tr>" if result: # != 0 means failed in os.system resultStr = '<font color="red">[FAILED]</font>' else: resultStr = '<font color="green">[SUCCEED]</font>' logStr = '<a href="file://%s">%s</a>' % (logFile, basename(logFile)) f.write(rowStr % (self.testCount, cmd, runTime, resultStr, logStr)) f.write('\n') if self.headerPrefix in l: f.write(self.headerPrefix + self.testTimer.getToc() + '</h3>\n') else: f.write(l) f.close() def _runNewItem(self, itemType, itemName): if self._match(itemName): spaces = (itemType * 2) * ' ' script = getTestsScript() cmd = "%s %s %s %s" % (pw.PYTHON, script, spaces, itemName) run = ((itemType == MODULE and self.mode == 'modules') or (itemType == CLASS and self.mode in ('classes', 'onlyclasses')) or (itemType == TEST and self.mode == 'all')) if run: if self.log: logFile = join(self.testsDir, '%s.txt' % itemName) cmdFull = cmd + " > %s 2>&1" % logFile else: logFile = '' cmdFull = cmd print( t = pwutils.Timer() t.tic() self.testCount += 1 result = os.system(cmdFull) if self.log: self._logTest(cmd, t.getToc(), result, logFile)
[docs] def runTests(self, moduleName, tests): self.testCount = 0 if self.log: self.testsDir = join(pw.Config.SCIPION_USER_DATA, 'Tests', self.log) pwutils.cleanPath(self.testsDir) pwutils.makePath(self.testsDir) self.testLog = join(self.testsDir, 'tests.html') self.testTimer = pwutils.Timer() self.testTimer.tic() self.headerPrefix = '<h3>Test results (%s) Duration: ' % pwutils.prettyTime() f = open(self.testLog, 'w') f.write("""<!DOCTYPE html> <html> <body> """) f.write(self.headerPrefix + '</h3>') f.write(""" <table style="width:100%" border="1"> <tr> <th>#</th> <th>Command</th> <th>Time</th> <th>Result</th> <th>Log file</th> </tr> <!-- LAST_ROW --> </table> </body> </html>""") f.close() self._visitTests(moduleName, tests, self._runNewItem) if self.log: print("\n\nOpen results in your browser: \nfile:///%s" % self.testLog)
[docs] def runSingleTest(self, tests): result = pwtests.GTestResult() result.doReport() resultPassed = result.numberTests - result.testFailed sys.exit(1 if result.testFailed > 0 or resultPassed == 0 else 0)
if __name__ == '__main__': Tester().main()