# **************************************************************************
# *
# * Authors: Carlos Oscar Sanchez Sorzano (coss@cnb.csic.es)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
from pyworkflow.viewer import ProtocolViewer, DESKTOP_TKINTER
from pwem.viewers import ChimeraView
from pyworkflow.protocol.params import PointerParam, LabelParam
from xmipp3.protocols.protocol_normalize_strain import XmippProtNormalizeStrain
[docs]class XmippNormalizeStrainViewer(ProtocolViewer):
""" Visualize the output of protocol volume strain """
_label = 'viewer normalize strain'
_targets = [XmippProtNormalizeStrain]
_environments = [DESKTOP_TKINTER]
def __init__(self, **args):
ProtocolViewer.__init__(self, **args)
def _defineParams(self, form):
form.addSection(label='Visualization')
# Select the level to show
form.addParam('show', LabelParam,
label="Strain calculation to visualize")
form.addParam('protToShow', PointerParam, pointerClass='XmippProtVolumeStrain',
label="Select protocol")
def _getVisualizeDict(self):
return {'show': self._viewStrain}
def _viewStrain(self, e=None):
import os
protToShow = self.protToShow.get()
protId = protToShow.getObjId()
views=[]
fnCmd = self.protocol._getPath('%d_result_strain_chimera.cmd'%protId)
if os.path.exists(fnCmd):
views.append(ChimeraView(fnCmd))
fnCmd = self.protocol._getPath('%d_result_localrot_chimera.cmd'%protId)
if os.path.exists(fnCmd):
views.append(ChimeraView(fnCmd))
fnCmd = protToShow._getPath('result_morph_chimera.cmd')
if os.path.exists(fnCmd):
views.append(ChimeraView(fnCmd))
return views