xmipp3.protocols.protocol_split_volume_hierarchical_cluster module

class xmipp3.protocols.protocol_split_volume_hierarchical_cluster.XmippProtSplitVolumeHierarchical(*args, **kwargs)

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Construct image groups based on the angular assignment. All images assigned within a solid angle are assigned to a class. Classes are not exclusive and an image may be assigned to multiple classes

classifyGroupsStep()

classifyOneGroup(projNumber, projMdBlock, projRef, mdClasses, mdImages)

Classify one of the neighbourhood groups if not empty. Class information will be stored in output metadata: mdOut

cleaningStep()

constructGroupsStep(particlesId, angularSampling, angularDistance, symmetryGroup)

convertInputStep(particlesId, volId)

Write the input images as a Xmipp metadata file. particlesId: is only need to detect changes in input particles and cause restart from here.

createOutputStep()

homogeneizeStep()

refineAnglesStep()

runReconstruction(fnXmd, fnVol)

splitVolumeStep()