xmipp3.protocols.protocol_consensus_classes3D module

class xmipp3.protocols.protocol_consensus_classes3D.XmippProtConsensusClasses3D(*args, **kwargs)[source]

Bases: EMProtocol

Compare several SetOfClasses3D. Return the consensus clustering based on a objective function that uses the similarity between clusters intersections and the entropy of the clustering formed.

class ClassesLoader(clustering, representatives, randomConsensusSizes=None, randomConsensusRelativeSizes=None)[source]

Bases: object

Helper class to produce classes

fillClasses(clsSet)[source]

class ParticleCluster(particleIds, representative=None, sourceSize=None)[source]

Bases: object

Keeps track of the information related to successive class intersections. It is instantiated with a single class and allows to perform intersections and unions with it

getParticleIds()[source]

getRelativeSize()[source]

getRepresentative()[source]

getSourceSize()[source]

intersection(*others)[source]

union(*others)[source]

checkSignificanceStep()[source]

createOutputStep()[source]

ensembleStep(numClusters=1)[source]

findElbowsStep()[source]

intersectStep()[source]