Scipion

Set up

  • Installing Scipion
  • Scipion configuration
  • Host configuration
  • Troubleshooting

User documentation

  • Graphical interface manuals
  • Tutorials
  • Processing How To’s

Facilities

  • On-the-fly processing
  • Streaming workflows
  • Summary Reports

Developer documentation

  • Developers Page

API Documentation

  • Scipion API
  • Plugins API
    • appion package
    • atomstructutils package
    • atsas package
    • bamfordlab package
    • bsoft package
    • ccp4 package
    • chimera package
    • cistem package
    • cryoef package
    • cryosparc2 package
    • deepfinder package
    • dynamo package
    • eman2 package
    • emxlib package
    • fsc3d package
    • gautomatch package
    • gctf package
    • imod package
    • localrec package
    • locscale package
    • motioncorr package
    • novactf package
    • phenix package
    • relion package
      • relion.convert package
      • relion.protocols package
        • relion.protocols.protocol_assign_optic_groups module
        • relion.protocols.protocol_autopick module
        • relion.protocols.protocol_autopick_log module
        • relion.protocols.protocol_autopick_ref module
        • relion.protocols.protocol_base module
        • relion.protocols.protocol_bayesian_polishing module
        • relion.protocols.protocol_center_averages module
        • relion.protocols.protocol_classify2d module
        • relion.protocols.protocol_classify3d module
        • relion.protocols.protocol_compress_estimate_gain module
        • relion.protocols.protocol_compress_movies module
        • relion.protocols.protocol_create_mask3d module
        • relion.protocols.protocol_crop_resize module
        • relion.protocols.protocol_ctf_refinement module
        • relion.protocols.protocol_expand_symmetry module
        • relion.protocols.protocol_export_coords module
        • relion.protocols.protocol_export_ctf module
        • relion.protocols.protocol_export_particles module
        • relion.protocols.protocol_extract_particles module
        • relion.protocols.protocol_gentle_clean module
        • relion.protocols.protocol_initialmodel module
        • relion.protocols.protocol_localres module
        • relion.protocols.protocol_motioncor module
        • relion.protocols.protocol_multibody module
        • relion.protocols.protocol_postprocess module
        • relion.protocols.protocol_preprocess module
        • relion.protocols.protocol_reconstruct module
        • relion.protocols.protocol_refine3d module
        • relion.protocols.protocol_remove_views module
        • relion.protocols.protocol_subtract module
        • relion.protocols.protocol_symmetrize_volume module
      • relion.viewers package
      • relion.bibtex module
      • relion.constants module
      • relion.objects module
      • relion.wizards module
    • resmap package
    • sphire package
    • spider package
    • tomo package
    • tomoj package
    • topaz package
    • xmipp2 package
    • xmipp3 package
    • xmipptomo package
  • Xmipp API

Get in touch

  • Contact Us

Licences

  • Licenses
Scipion
  • Docs »
  • Plugins API »
  • relion package »
  • relion.protocols package
  • View page source

relion.protocols package¶

Submodules¶

  • relion.protocols.protocol_assign_optic_groups module
  • relion.protocols.protocol_autopick module
  • relion.protocols.protocol_autopick_log module
  • relion.protocols.protocol_autopick_ref module
  • relion.protocols.protocol_base module
  • relion.protocols.protocol_bayesian_polishing module
  • relion.protocols.protocol_center_averages module
  • relion.protocols.protocol_classify2d module
  • relion.protocols.protocol_classify3d module
  • relion.protocols.protocol_compress_estimate_gain module
  • relion.protocols.protocol_compress_movies module
  • relion.protocols.protocol_create_mask3d module
  • relion.protocols.protocol_crop_resize module
  • relion.protocols.protocol_ctf_refinement module
  • relion.protocols.protocol_expand_symmetry module
  • relion.protocols.protocol_export_coords module
  • relion.protocols.protocol_export_ctf module
  • relion.protocols.protocol_export_particles module
  • relion.protocols.protocol_extract_particles module
  • relion.protocols.protocol_gentle_clean module
  • relion.protocols.protocol_initialmodel module
  • relion.protocols.protocol_localres module
  • relion.protocols.protocol_motioncor module
  • relion.protocols.protocol_multibody module
  • relion.protocols.protocol_postprocess module
  • relion.protocols.protocol_preprocess module
  • relion.protocols.protocol_reconstruct module
  • relion.protocols.protocol_refine3d module
  • relion.protocols.protocol_remove_views module
  • relion.protocols.protocol_subtract module
  • relion.protocols.protocol_symmetrize_volume module

Module contents¶

Next Previous

© Copyright 2020, Scipion team

Built with Sphinx using a theme provided by Read the Docs.
Other Versions v: release-3.0.0
Branches
gh-pages
release-2.0.0
release-3.0.0
rm_model_building