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dynamo package¶

Subpackages¶

  • dynamo.convert package
    • Submodules
      • dynamo.convert.convert module
    • Module contents
  • dynamo.protocols package
    • Submodules
      • dynamo.protocols.protocol_bin_tomograms module
      • dynamo.protocols.protocol_boxing module
      • dynamo.protocols.protocol_coords_to_model module
      • dynamo.protocols.protocol_extraction module
      • dynamo.protocols.protocol_import_subtomos module
      • dynamo.protocols.protocol_import_tomograms module
      • dynamo.protocols.protocol_model_workflow module
      • dynamo.protocols.protocol_subBoxing module
      • dynamo.protocols.protocol_subtomo_MRA module
    • Module contents
  • dynamo.viewers package
    • Submodules
      • dynamo.viewers.viewers_data module
      • dynamo.viewers.views_tkinter_tree module
    • Module contents

Submodules¶

  • dynamo.bibtex module
  • dynamo.constants module
  • dynamo.wizards module

Module contents¶

class dynamo.Plugin[source]¶

Bases: pwem.Plugin

classmethod defineBinaries(env)[source]¶

Define required binaries in the given Environment.

classmethod getDynamoProgram()[source]¶
classmethod getEnviron()[source]¶

Create the needed environment for Dynamo programs.

classmethod runDynamo(protocol, args, cwd=None)[source]¶

Run Dynamo command from a given protocol.

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