chimera package

Subpackages

• chimera.protocols package
  • Submodules
    • chimera.protocols.protocol_alphafold module
    • chimera.protocols.protocol_base module
    • chimera.protocols.protocol_contacts module
    • chimera.protocols.protocol_fit module
    • chimera.protocols.protocol_modeller_search module
    • chimera.protocols.protocol_operate module
    • chimera.protocols.protocol_restore module
    • chimera.protocols.protocol_subtraction_maps module
  • Module contents
• chimera.viewers package
  • Submodules
    • chimera.viewers.viewer module
    • chimera.viewers.viewer_contacts module
  • Module contents

Submodules

• chimera.bibtex module
• chimera.constants module
• chimera.convert module
• chimera.editList module
• chimera.getchimera module
• chimera.parser_h1 module
• chimera.utils module
• chimera.wizards module

Module contents

class chimera.Plugin

Bases: pwem.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod defineChimeraXInstallation(env, version, default=False, tarDir=None)

classmethod getEnviron()

Setup the environment variables needed to launch programs.

classmethod getProgram(progName='ChimeraX')

Return the program binary that will be used.

classmethod getPython(progName='python*')

Return the program binary that will be used.

classmethod isVersionActive()

classmethod runChimeraProgram(program, args='', cwd=None, extraEnv=None)

Internal shortcut function to launch chimera program.