cistem package

Subpackages

• cistem.convert package
  • Submodules
    • cistem.convert.convert module
    • cistem.convert.dataimport module
  • Module contents
• cistem.protocols package
  • Submodules
    • cistem.protocols.program_ctffind module
    • cistem.protocols.protocol_ctffind module
    • cistem.protocols.protocol_picking module
    • cistem.protocols.protocol_refine2d module
    • cistem.protocols.protocol_ts_ctffind module
    • cistem.protocols.protocol_unblur module
  • Module contents
• cistem.viewers package
  • Submodules
    • cistem.viewers.tomo_viewers module
    • cistem.viewers.viewers module
  • Module contents

Submodules

• cistem.bibtex module
• cistem.constants module
• cistem.wizards module

Module contents

class cistem.Plugin

Bases: pwem.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getEnviron()

Setup the environment variables needed to launch cisTEM.

classmethod getProgram(program)

Return the program binary that will be used.