localrec package

Subpackages

• localrec.protocols package
  • Submodules
    • localrec.protocols.protocol_filter_subparticles module
    • localrec.protocols.protocol_localized module
    • localrec.protocols.protocol_localized_extraction module
    • localrec.protocols.protocol_localized_set_origin module
    • localrec.protocols.protocol_localized_stitch module
    • localrec.protocols.protocol_localized_subset module
  • Module contents
• localrec.viewers package
  • Submodules
    • localrec.viewers.viewer module
  • Module contents

Submodules

• localrec.bibtex module
• localrec.constants module
• localrec.convert module
• localrec.progressbar module
• localrec.utils module

Module contents

This sub-package contains data and protocol classes wrapping Localized recontruction of subunits.

class localrec.Plugin

Bases: pwem.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getEnviron()

Setup the environment variables needed to launch localrec.

classmethod isVersionActive()

classmethod validateInstallation()

Check if the binaries are properly installed and if not, return a list with the error messages.

The default implementation will check if the _pathVars exists.