pkpd package

Subpackages

• pkpd.data package
  • Module contents
• pkpd.models package
  • Submodules
    • pkpd.models.dissolution_models module
    • pkpd.models.pd_models module
    • pkpd.models.pk_models module
    • pkpd.models.sa_models module
  • Module contents
• pkpd.protocols package
  • Submodules
    • pkpd.protocols.import_experiment module
    • pkpd.protocols.protocol_batch_create_experiment module
    • pkpd.protocols.protocol_pkpd module
    • pkpd.protocols.protocol_pkpd_BE_power_analysis module
    • pkpd.protocols.protocol_pkpd_absorption_rate module
    • pkpd.protocols.protocol_pkpd_allometric_scaling module
    • pkpd.protocols.protocol_pkpd_apply_allometric_scaling module
    • pkpd.protocols.protocol_pkpd_average_sample module
    • pkpd.protocols.protocol_pkpd_bootstrap_simulate module
    • pkpd.protocols.protocol_pkpd_bootstrap_simulate2 module
    • pkpd.protocols.protocol_pkpd_change_units module
    • pkpd.protocols.protocol_pkpd_change_via module
    • pkpd.protocols.protocol_pkpd_compare_experiments module
    • pkpd.protocols.protocol_pkpd_create_experiment module
    • pkpd.protocols.protocol_pkpd_create_label module
    • pkpd.protocols.protocol_pkpd_create_label_2exps module
    • pkpd.protocols.protocol_pkpd_cumulated_dose module
    • pkpd.protocols.protocol_pkpd_dissolution_deconvolve module
    • pkpd.protocols.protocol_pkpd_dissolution_deconvolve_Fourier module
    • pkpd.protocols.protocol_pkpd_dissolution_f2 module
    • pkpd.protocols.protocol_pkpd_dissolution_fit module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc_generic module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc_internal_validity module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc_join module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc_join_recalculate module
    • pkpd.protocols.protocol_pkpd_dissolution_ivivc_splines module
    • pkpd.protocols.protocol_pkpd_dissolution_levyplot module
    • pkpd.protocols.protocol_pkpd_dissolution_levyplot_join module
    • pkpd.protocols.protocol_pkpd_dissolution_loo_riegelman module
    • pkpd.protocols.protocol_pkpd_dissolution_loo_riegelman_inverse module
    • pkpd.protocols.protocol_pkpd_dissolution_simulate module
    • pkpd.protocols.protocol_pkpd_dissolution_simulation module
    • pkpd.protocols.protocol_pkpd_dissolution_target module
    • pkpd.protocols.protocol_pkpd_dissolution_wagner_nelson module
    • pkpd.protocols.protocol_pkpd_dose_escalation module
    • pkpd.protocols.protocol_pkpd_drop_measurements module
    • pkpd.protocols.protocol_pkpd_elimination_rate module
    • pkpd.protocols.protocol_pkpd_estimate_bioavailability module
    • pkpd.protocols.protocol_pkpd_exponential_fit module
    • pkpd.protocols.protocol_pkpd_export_to_csv module
    • pkpd.protocols.protocol_pkpd_filter_measurements module
    • pkpd.protocols.protocol_pkpd_filter_population module
    • pkpd.protocols.protocol_pkpd_filter_samples module
    • pkpd.protocols.protocol_pkpd_fit_base module
    • pkpd.protocols.protocol_pkpd_fit_bootstrap module
    • pkpd.protocols.protocol_pkpd_gather_fitting module
    • pkpd.protocols.protocol_pkpd_import_from_csv module
    • pkpd.protocols.protocol_pkpd_import_from_table module
    • pkpd.protocols.protocol_pkpd_import_from_winnonlin module
    • pkpd.protocols.protocol_pkpd_inhalation_import_deposition module
    • pkpd.protocols.protocol_pkpd_inhalation_lung_physiology module
    • pkpd.protocols.protocol_pkpd_inhalation_simulate module
    • pkpd.protocols.protocol_pkpd_inhalation_substance_properties module
    • pkpd.protocols.protocol_pkpd_iv_two_compartments module
    • pkpd.protocols.protocol_pkpd_join_samples module
    • pkpd.protocols.protocol_pkpd_merge_labels module
    • pkpd.protocols.protocol_pkpd_merge_populations module
    • pkpd.protocols.protocol_pkpd_monocompartment module
    • pkpd.protocols.protocol_pkpd_monocompartment_clint module
    • pkpd.protocols.protocol_pkpd_monocompartment_conv module
    • pkpd.protocols.protocol_pkpd_monocompartment_linkpd module
    • pkpd.protocols.protocol_pkpd_monocompartment_pd module
    • pkpd.protocols.protocol_pkpd_monocompartment_urine module
    • pkpd.protocols.protocol_pkpd_nca_iv_exp module
    • pkpd.protocols.protocol_pkpd_nca_iv_obs module
    • pkpd.protocols.protocol_pkpd_nca_niv module
    • pkpd.protocols.protocol_pkpd_nca_numeric module
    • pkpd.protocols.protocol_pkpd_ode_base module
    • pkpd.protocols.protocol_pkpd_ode_bootstrap module
    • pkpd.protocols.protocol_pkpd_ode_refine module
    • pkpd.protocols.protocol_pkpd_ode_two_vias module
    • pkpd.protocols.protocol_pkpd_operate_experiment module
    • pkpd.protocols.protocol_pkpd_particle_size module
    • pkpd.protocols.protocol_pkpd_pdgeneric_fit module
    • pkpd.protocols.protocol_pkpd_regression_labels module
    • pkpd.protocols.protocol_pkpd_sa_base module
    • pkpd.protocols.protocol_pkpd_scale_to_common_dose module
    • pkpd.protocols.protocol_pkpd_simulate_dose_escalation module
    • pkpd.protocols.protocol_pkpd_simulate_drug_interactions module
    • pkpd.protocols.protocol_pkpd_simulate_generic_pd module
    • pkpd.protocols.protocol_pkpd_simulate_liver_flow module
    • pkpd.protocols.protocol_pkpd_split_gather module
    • pkpd.protocols.protocol_pkpd_statistics_labels module
    • pkpd.protocols.protocol_pkpd_stats_mahalanobis module
    • pkpd.protocols.protocol_pkpd_stats_oneExperiment_twoSubgroups_mean module
    • pkpd.protocols.protocol_pkpd_stats_twoExperiments_twoSubgroups_kolmogorov module
    • pkpd.protocols.protocol_pkpd_stats_twoExperiments_twoSubgroups_mean module
    • pkpd.protocols.protocol_pkpd_three_compartments module
    • pkpd.protocols.protocol_pkpd_two_compartments module
    • pkpd.protocols.protocol_pkpd_two_compartments_autoinduction module
    • pkpd.protocols.protocol_pkpd_two_compartments_clint module
    • pkpd.protocols.protocol_pkpd_two_compartments_clint_cl module
    • pkpd.protocols.protocol_pkpd_two_compartments_conv module
    • pkpd.protocols.protocol_pkpd_two_compartments_metabolite module
    • pkpd.protocols.protocol_pkpd_twocompartments_both module
    • pkpd.protocols.protocol_pkpd_twocompartments_both_pd module
    • pkpd.protocols.protocol_pkpd_twocompartments_urine module
  • Module contents
• pkpd.viewers package
  • Submodules
    • pkpd.viewers.tk_experiment module
    • pkpd.viewers.tk_ode module
    • pkpd.viewers.tk_populations module
    • pkpd.viewers.viewer module
    • pkpd.viewers.viewer_pkpd_BE_power_analysis module
    • pkpd.viewers.viewer_pkpd_compare_experiments module
    • pkpd.viewers.viewer_pkpd_dissolution_f2 module
    • pkpd.viewers.viewer_pkpd_dissolution_ivivc_internal_validity module
    • pkpd.viewers.viewer_pkpd_particle_size module
    • pkpd.viewers.viewer_pkpd_simulate_drug_interactions module
    • pkpd.viewers.viewer_pkpd_simulate_liver_flow module
    • pkpd.viewers.viewer_pkpd_stats_mahalanobis module
  • Module contents

Submodules

• pkpd.bibtex module
• pkpd.biopharmaceutics module
• pkpd.constants module
• pkpd.inhalation module
• pkpd.objects module
• pkpd.pkpd_units module
• pkpd.utils module
• pkpd.wizards module

Module contents

PKPD functions

class pkpd.Plugin

Bases: pwem.Plugin

classmethod checkRPackage(packageName)

classmethod getEnviron()

Setup the environment variables needed to launch pkdp

classmethod getRscript()

classmethod runRscript(scriptString)