pkpd.protocols.protocol_pkpd_fit_base module

class pkpd.protocols.protocol_pkpd_fit_base.ProtPKPDFitBase(**kwargs)[source]

Bases: pkpd.protocols.protocol_pkpd.ProtPKPD

Base fit protocol

calculateParameterUnits(sample)[source]
createModel()[source]
createOutputStep()[source]
filterVarForWizard(v)[source]

Define the type of variables required (used in wizard).

forwardModel(prm, xValues)[source]
getBounds()[source]
getInputExperiment()[source]
getNumberOfParameters()[source]
getParameterBounds()[source]

Return a dictionary where the parameter name is the key and the bounds are its values.

getParameterNames()[source]
getXYvars()[source]
parseBounds(boundsString)[source]
postAnalysis()[source]
postSampleAnalysis(sampleName)[source]
prepareForAnalysis()[source]
prepareForSampleAnalysis(sampleName)[source]
runFit(objId, otherDependencies)[source]
setExperiment(experiment)[source]
setParameters(prm)[source]
setSample(sample)[source]
setupFromFormParameters()[source]
setupModel()[source]