pkpd.wizards module

class pkpd.wizards.DoseTreeProvider(experiment)

Bases: pyworkflow.gui.tree.TreeProvider

getColumns()

Return a list of tuples (c, w) where: c: is the column name and index w: is the column width

getObjectInfo(obj)

This function will be called by the Tree with each object that will be inserted. A dictionary should be returned with the possible following entries: ‘key’: the key value to insert in the Tree ‘text’: text of the object to be displayed

(if not passed the ‘key’ will be used)

‘image’: image path to be displayed as icon (optional) ‘parent’: the object’s parent in which insert this object (optional) ‘tags’: list of tags names (optional)

getObjects()

Return the objects that will be inserted in the Tree

class pkpd.wizards.FilterVariablesTreeProvider(experiment, filter=None)

Bases: pyworkflow.gui.tree.TreeProvider

Simplified view of VariablesTreeProvider with less columns. Additionally, we can filter by a given function.

getColumns()

Return a list of tuples (c, w) where: c: is the column name and index w: is the column width

getObjectInfo(obj)

This function will be called by the Tree with each object that will be inserted. A dictionary should be returned with the possible following entries: ‘key’: the key value to insert in the Tree ‘text’: text of the object to be displayed

(if not passed the ‘key’ will be used)

‘image’: image path to be displayed as icon (optional) ‘parent’: the object’s parent in which insert this object (optional) ‘tags’: list of tags names (optional)

getObjects()

Return the objects that will be inserted in the Tree

class pkpd.wizards.MultiListDialog(parent, title, provider, message=None, **kwargs)

Bases: pyworkflow.gui.dialog.ListDialog

Select elements among several lists.

apply()

process the data This method is called automatically to process the data, after the dialog is destroyed. By default, it does nothing.

class pkpd.wizards.PKPDChooseDoseWizard

Bases: pyworkflow.wizard.Wizard

getSelectMode()

setFormValues(form, label, values)

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.PKPDChooseSeveralVariableWizard

Bases: pkpd.wizards.PKPDChooseVariableWizard

getSelectMode()

getTitle()

setFormValues(form, label, values)

class pkpd.wizards.PKPDChooseVariableWizard

Bases: pyworkflow.wizard.Wizard

getSelectMode()

getTitle()

setFormValues(form, label, values)

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.PKPDDoseTemplateWizard

Bases: pyworkflow.wizard.Wizard

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.PKPDDosesToSamplesTemplateWizard

Bases: pyworkflow.wizard.Wizard

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.PKPDODEWizard

Bases: pyworkflow.wizard.Wizard

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.PKPDVariableTemplateWizard

Bases: pyworkflow.wizard.Wizard

show(form, *params)

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.

Some times the same wizard will modify several elements in the form.

*params: a list of params to modify, sometimes the wizard can

be generic and can be used for different parameters in the same form.

class pkpd.wizards.SimpleListTreeProvider(strList, name='Name', width=100)

Bases: pyworkflow.gui.tree.TreeProvider

A simple TreeProvider over the elements of a string list

getColumns()

Return a list of tuples (c, w) where: c: is the column name and index w: is the column width

getObjectInfo(obj)

This function will be called by the Tree with each object that will be inserted. A dictionary should be returned with the possible following entries: ‘key’: the key value to insert in the Tree ‘text’: text of the object to be displayed

(if not passed the ‘key’ will be used)

‘image’: image path to be displayed as icon (optional) ‘parent’: the object’s parent in which insert this object (optional) ‘tags’: list of tags names (optional)

getObjects()

Return the objects that will be inserted in the Tree

class pkpd.wizards.VariablesProvider(parent, title, **kwargs)

Bases: pyworkflow.gui.dialog.Dialog

This class create a frame with the pkpd variables

body(bodyFrame)

create dialog body. return widget that should have initial focus. This method should be overridden, and is called by the __init__ method.

restartValues(restartAll=False)