imod.protocols.protocol_xCorrPrealignment module

class imod.protocols.protocol_xCorrPrealignment.ProtImodXcorrPrealignment(**args)[source]

Bases: imod.protocols.protocol_base.ProtImodBase

Tilt-series’ cross correlation alignment based on the IMOD procedure. More info:

closeOutputSetsStep()[source]
computeInterpolatedStackStep(tsObjId)[source]
computeXcorrStep(tsObjId)[source]

Compute transformation matrix for each tilt series

generateOutputStackStep(tsObjId)[source]

Generate tilt-serie with the associated transform matrix