imod.protocols.protocol_xCorrPrealignment module

class imod.protocols.protocol_xCorrPrealignment.ProtImodXcorrPrealignment(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Tilt-series’ cross correlation alignment based on the IMOD procedure. More info:

computeInterpolatedStackStep(tsObjId)[source]
computeXcorrStep(tsObjId)[source]

Compute transformation matrix for each tilt series

convertInputStep(tsObjId)[source]
getOutputInterpolatedSetOfTiltSeries()[source]
getOutputSetOfTiltSeries()[source]