imod.protocols.protocol_etomo module

class imod.protocols.protocol_etomo.ProtImodEtomo(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Simple wrapper around etomo to manually reconstruct a Tomogram.

More info:
https://bio3d.colorado.edu/imod/doc/etomoTutorial.html
convertInputStep(ts)[source]
createOutput()[source]
getFilePath(ts, suffix='', extension='')[source]
getPixSizeFromDimensions(outputDim)[source]
getResizeFactorFromDimensions(outputDim)[source]
runAllSteps(obj)[source]
runEtomo(ts)[source]
runEtomoStep()[source]