imod.protocols.protocol_fiducialModel module

class imod.protocols.protocol_fiducialModel.ProtImodFiducialModel(**args)[source]

Bases: imod.protocols.protocol_base.ProtImodBase

Construction of a fiducial model and alignment of tilt-series based on the IMOD procedure. More info:

computeOutputModelsStep(tsObjId)[source]
createOutputFailedSet(tsObjId)[source]
createOutputStep()[source]
generateFiducialModelStep(tsId)[source]
generateFiducialSeedStep(tsId)[source]
static generateTaSolutionText(tiltAlignOutputLog, taSolutionLog, numberOfTiltImages, pixelSize)[source]

This method generates a text file containing the TA solution from the tiltalign output log.

generateTrackComStep(tsObjId)[source]
translateFiducialPointModelStep(tsObjId)[source]
translateTrackCom(ts, paramsDict)[source]
tryExceptDecorator()[source]

This decorator wraps the step in a try/except module which adds the tilt series ID to the failed TS array in case the step fails