cryosparc2.protocols.protocol_cryosparc_ab module

class cryosparc2.protocols.protocol_cryosparc_ab.ProtCryoSparcInitialModel(**kwargs)

Bases: cryosparc2.protocols.protocol_base.ProtCryosparcBase, pwem.protocols.protocol_3d.ProtInitialVolume, pwem.protocols.protocol_3d.ProtClassify3D

Generate a 3D initial model _de novo_ from 2D particles using CryoSparc Stochastic Gradient Descent (SGD) algorithm.

createOutputStep()

Create the protocol output. Convert cryosparc file to Relion file

doRunAbinit()

self._program + ” ‘do_run_abinit(“” + self.projectName + “”, “” + self.workSpaceName + “”, “’” + self._user + “’”, “” + self.par + “”,“‘1’”)’”)

processStep()