xmipptomo.protocols.protocol_crop_tomograms module

class xmipptomo.protocols.protocol_crop_tomograms.XmippProtCropTomograms(**kwargs)

Bases: xmipptomo.protocols.protocol_crop_resize_base.XmippProtCropBase3D

Protocol to crop tomograms using xmipp_transform_window. The protocol allows to change the size of a tomogram/s, by removing the borders defined by the users

closeStreamStep()

cropTomogramsStep(tomoSet, tomId)

This function resize the tomograms by means of xmipp_transform_window. The output is create in pseudo-streaming. pseudo because the input is not open, but the output is updated during the execution of the protocol

getOutputSetOfTomograms()

This function defines the output of the protocol

outputTomoFileName(folder, tomId, ext)